Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G07f
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    26   2.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   6.6  

>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 60  ELRRTLGLAAAKARKQAK 7
           ELR+TLG A+A  RK+A+
Sbjct: 115 ELRKTLGAASATGRKRAR 132


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 320 PGYPIRPIVSRITISLAVVLQR 385
           PG P++P++  IT +L  +L+R
Sbjct: 401 PGIPVKPMLGSITKNLQHMLER 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,743
Number of Sequences: 5004
Number of extensions: 13798
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)