Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G05f
         (428 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000447DE0 Cluster: PREDICTED: similar to novel cycl...    36   0.47 
UniRef50_P30624 Cluster: Long-chain-fatty-acid--CoA ligase 1; n=...    33   3.3  
UniRef50_O51246 Cluster: Uncharacterized protein BB_0228; n=4; B...    32   5.8  
UniRef50_P30397 Cluster: Ribosomal operon-associated A protein; ...    32   5.8  

>UniRef50_UPI0000447DE0 Cluster: PREDICTED: similar to novel
           cyclophilin protein; n=1; Gallus gallus|Rep: PREDICTED:
           similar to novel cyclophilin protein - Gallus gallus
          Length = 231

 Score = 35.5 bits (78), Expect = 0.47
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 321 HIRGIQFYDGKWTRDYRFK--IAIGQLHRGAIVMTPILASIPYHIPLPRLVCRLSTCG 154
           H  G QFY       Y  K  +A GQL  G  V+   L ++P H   P++VC+++ CG
Sbjct: 171 HSNGSQFYITLQPVPYLDKKCVAFGQLIEGTEVLQR-LETVPTHNERPKVVCKVTNCG 227


>UniRef50_P30624 Cluster: Long-chain-fatty-acid--CoA ligase 1; n=18;
           Saccharomycetales|Rep: Long-chain-fatty-acid--CoA ligase
           1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 700

 Score = 32.7 bits (71), Expect = 3.3
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 411 INKRNHLIYRKM--GFYSFLKSTGK-QELTPRSHIRGIQFYDGKWTRDYRFKIAIGQLHR 241
           IN  N+L   K+    YS L  TGK Q L     + GI F+DG+WT    F  +  +L R
Sbjct: 623 INIENYLEDAKLIKAVYSDLLKTGKDQGLVGIELLAGIVFFDGEWTPQNGFVTSAQKLKR 682

Query: 240 GAIV 229
             I+
Sbjct: 683 KDIL 686


>UniRef50_O51246 Cluster: Uncharacterized protein BB_0228; n=4;
           Borrelia burgdorferi group|Rep: Uncharacterized protein
           BB_0228 - Borrelia burgdorferi (Lyme disease spirochete)
          Length = 971

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 347 VNKNLRQDHTFEGYNFTMESGLEIIDLK 264
           ++K   ++H  EGY F  ESGLE+  LK
Sbjct: 10  ISKTYLEEHDAEGYYFKHESGLEVFHLK 37


>UniRef50_P30397 Cluster: Ribosomal operon-associated A protein;
           n=2; Euglena gracilis|Rep: Ribosomal operon-associated A
           protein - Euglena gracilis
          Length = 516

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +1

Query: 223 SHYYCTAMKLSYRNFKSIISSPLSIVKLYPSNV*SWRKFLFTR*FKKTVKPHFAI 387
           SH Y +    SYRN K  IS+ L+I  LY  N     + +F + FK    P+F +
Sbjct: 414 SHLYSSKYFYSYRNMKFKISNTLNIFNLY--NKGKLERMIFEK-FKYKFSPNFIV 465


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,449,024
Number of Sequences: 1657284
Number of extensions: 9341122
Number of successful extensions: 23147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23138
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)