Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G05f
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0433 + 3794440-3794948,3795696-3796707                           31   0.39 
06_01_0379 - 2723365-2723490,2724558-2724647,2724813-2725046,272...    31   0.39 
03_01_0649 + 4757352-4758167                                           28   2.8  
10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197     27   4.9  
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    27   6.4  
07_03_1087 - 23868787-23869325,23870052-23870181                       27   6.4  

>08_01_0433 + 3794440-3794948,3795696-3796707
          Length = 506

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -3

Query: 327 RSHIRGIQFYDGKWTRDYRFKI-AIGQLHRGAIVMTPILASIPYHIPLPRLVCRLSTCGG 151
           R+   G +  +G+   + R    A  + H   + ++P  A++   +PLPR  CR     G
Sbjct: 49  RASAPGDEAVEGRQAEERRASSPAAHEAHEAKLHLSPSRATLSMVVPLPRARCRCVVYVG 108

Query: 150 NIMVIH 133
           NI + H
Sbjct: 109 NIALPH 114


>06_01_0379 -
           2723365-2723490,2724558-2724647,2724813-2725046,
           2725174-2725470
          Length = 248

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 140 TIIFPPHVLRRHTRRGNGIWYGMDASMGVITIAP 241
           T++FP H+ +RH      IWYG +   GV ++ P
Sbjct: 157 TLLFPVHLSKRHL-----IWYGFERKNGVHSVCP 185


>03_01_0649 + 4757352-4758167
          Length = 271

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 378 MGFYSFLKSTGKQELTPRSHIRGIQFYDGKWTRDYRFKIAIGQLHRGAIVMTPILASIPY 199
           MGF   L  T +   TPR+  + ++   G  T D   + A+ Q+H GA+       ++  
Sbjct: 189 MGFNVLLHGTQRDGRTPRAVEKALRGSKGAVTLDLAVEFAV-QVHAGALGFERRTLAVSC 247

Query: 198 HI 193
           HI
Sbjct: 248 HI 249


>10_08_0856 + 21099162-21099698,21100134-21101020,21101149-21101197
          Length = 490

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 58  IVFALCQKPLVQRSCCAGRHAARSLMYDHYISPTRTETAYEAWQRYMVWYG 210
           +  A  + P V  S  AGR AAR+  Y H+ +    E A  A +R  +W G
Sbjct: 92  VATAALRSPAVAGSA-AGRAAARATAYQHFCAGETAEEAAAAVRR--LWRG 139


>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
            23854038-23854243,23854311-23854443,23854607-23854688,
            23854785-23854914,23855034-23855126,23855211-23855333,
            23855786-23855977,23858230-23858394,23858697-23858768,
            23858826-23858945,23859873-23859949,23860032-23860398,
            23860738-23861871
          Length = 1212

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 154  PTRTETAYEAWQRYMVWYGREYGSHYYCTA 243
            PT+T     A  R  +WY  +YG   +C A
Sbjct: 991  PTQTMFYVPAENRAKLWYSTDYGMFRFCIA 1020


>07_03_1087 - 23868787-23869325,23870052-23870181
          Length = 222

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +1

Query: 25  DKTYPCEASSKIVFALCQKPLVQRSCCAGR 114
           DK  PC A         Q PL Q  CC G+
Sbjct: 153 DKLLPCPAPEVRRLECAQAPLPQPQCCNGK 182


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,068,036
Number of Sequences: 37544
Number of extensions: 259728
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)