Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G05f
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.2  
SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)                 28   2.9  
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)                     28   3.8  
SB_4271| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.8  
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.0  
SB_36537| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)          27   6.6  
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +1

Query: 127  SLMYDHYISPTRTETAYEAWQRYMVWYGREYGSHYYCTAMKLSYRNFKSIISSPLSIVKL 306
            S +YD +IS    + A   W+ + +   R+Y   Y+ +   L    F+S + + L   KL
Sbjct: 1989 STLYDQHISEDEYKHAIAVWEEFKLKTMRDYHDLYFESDTLLLADVFESFMRTCLEYYKL 2048

Query: 307  YP 312
             P
Sbjct: 2049 DP 2050


>SB_32907| Best HMM Match : Gly_radical (HMM E-Value=6)
          Length = 390

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 127 SLMYDHYISPTRTETAYEAWQRYMVWYGREYGSHYYCTAMKLSYRNFKSIISSPLSIVKL 306
           S MYD +IS    + A + W+++ +    +Y   Y  + + L    FK+   + L   KL
Sbjct: 228 STMYDQHISEDDYKHAKKMWKKFNLKTMGDYHDLYLESGILLLADLFKNFRKTCLEYYKL 287

Query: 307 YPSN 318
            P N
Sbjct: 288 DPCN 291


>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
          Length = 873

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 219 ILASIPYHIPLPRLVCRLSTCGGNI 145
           IL     H  LPRL+C L   GGNI
Sbjct: 636 ILNPYDVHPGLPRLICNLLLLGGNI 660


>SB_4271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 219 ILASIPYHIPLPRLVCRLSTCGGNI 145
           IL     H  LPRL+C L   GGNI
Sbjct: 67  ILNPYDVHPGLPRLICNLLLLGGNI 91


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = -2

Query: 232  SNDSHTRVHTIPYTVATPRMPSQY-----VWGKYNGHT 134
            S +SHT  HT+ Y   T R   QY     V   YN HT
Sbjct: 1005 SYNSHTARHTMHYYTLTTRYTIQYDTVHHVHASYNSHT 1042


>SB_36537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 256 RTTSSRCNSNDSHTRVHTIPYT 191
           R  + R   +DS TR+H+IP+T
Sbjct: 263 RQRNRRIRVDDSRTRIHSIPFT 284


>SB_16527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 325 ITHSRDTILRWKVDSRLSI*NCDRTTSSRCNSNDSHTRVHTIP 197
           +T +R  IL  + D +L+   C + TS     + SH R  T+P
Sbjct: 355 LTKTRGKILE-RFDKKLATTGCTKKTSLGWKRSSSHARRQTVP 396


>SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)
          Length = 529

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 288 WTRDYRFKIAIGQLHRGAIVMTPILASIPYHIPLPRLVCR 169
           WT+   + ++IG  + G  V+T +     YH   P   CR
Sbjct: 324 WTKSKFYGMSIGVANVGEAVITLLEHEEEYHFTFPSAFCR 363


>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 250 TSSRCNSNDSHTRVHTIPYTVATPRMPSQY 161
           TSSR + N+S+T +HT+  T   P   +Q+
Sbjct: 668 TSSRRHGNNSNTTLHTLAPTTHKPPPSNQH 697


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,187
Number of Sequences: 59808
Number of extensions: 308551
Number of successful extensions: 785
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)