Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G05f
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098992-9|AAC67451.1|  425|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related ...    28   3.3  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    27   7.5  
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    26   10.0 
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    26   10.0 

>AF098992-9|AAC67451.1|  425|Caenorhabditis elegans Hypothetical
           protein F53C3.11 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 411 INKRNHLIYRKMGFYSFLKSTGK 343
           +NKR  ++Y    F+ FLKS  K
Sbjct: 77  LNKRKFILYNSSNFFKFLKSVAK 99


>Z81136-3|CAD27610.1|  196|Caenorhabditis elegans Hypothetical
           protein W02B8.5 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -2

Query: 265 NCDRTTSSRCNSNDSHTRVHTIP-YTVATPRMPSQYVWGKYNGHTL---DCGLRDDRR 104
           N  R  SS+C+     T +HT+P  T+      +  V G+  GH L    C L   RR
Sbjct: 68  NRPRNFSSQCDGEMDVTNMHTVPCRTICLTIQQNLVVMGQPTGHRLYMRGCALTIARR 125


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 310  DTILRWKVDSRLSI*NCDRTTSSRCNSNDSH 218
            D ILRW+ DS  S   C     S CN N +H
Sbjct: 1742 DNILRWRFDSEKS--QCVTFMYSGCNPNANH 1770


>AF324055-1|AAK01416.1|  151|Caenorhabditis elegans Ly-6-related
           protein HOT-3 protein.
          Length = 151

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -2

Query: 265 NCDRTTSSRCNSNDSHTRVHTIP-YTVATPRMPSQYVWGKYNGHTL---DCGLRDDRR 104
           N  R  SS+C+     T +HT+P  T+      +  V G+  GH L    C L   RR
Sbjct: 23  NRPRNFSSQCDGEMDVTNMHTVPCRTICLTIQQNLVVMGQPTGHRLYMRGCALTIARR 80


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 298 RWKVDSRLSI*NCDRTTSSRCNSNDSHTRVHTIPYTVATPRMPSQY-VWGKYN 143
           R++  +R S+ +   T     N++D  + VHT  + +   R P  Y V+ K+N
Sbjct: 82  RFRFSARRSLIDDVETFQRNVNTSDVISIVHTFQFIIIFNRFPDPYSVYTKHN 134


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
 Frame = -3

Query: 393 LIYRKMG-FYSFLKSTGKQELTPRSHIRGIQFYDGKWTRDYRFKIAIGQLHRG 238
           L Y   G  YS   +        R  +  +  YD  W  DY   I +G  H G
Sbjct: 5   LFYSTFGCLYSPTSTMDVMGTARRKTVVRLNVYDMYWLNDYASNIGVGIFHSG 57


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 13  VLLMDKT-YPCEASSKIVFALCQKPLVQRSCCAGRHAARSLMYDHY 147
           ++  DK+   CE  +K +   C  PL+Q+S        R L++  Y
Sbjct: 662 IMTNDKSAIKCERCTKSIHEKCAAPLLQQSVMCPTCKQRMLLFSEY 707


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,384,878
Number of Sequences: 27780
Number of extensions: 220576
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)