Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G05f
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   5.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 196 YTVATPRMPSQYVWGKY 146
           YT+    MP   VWG++
Sbjct: 172 YTIPWALMPVMGVWGRF 188


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 381 KMGFYSFLKSTGKQELTPRSHIRG 310
           K+G    L ++G+ ELT R H  G
Sbjct: 241 KLGTKQVLMASGELELTLRIHRGG 264


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 211 VHTIPYTVATPRMPSQ 164
           +HTIP    TPR  ++
Sbjct: 398 IHTIPEVKVTPRFQAK 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,713
Number of Sequences: 438
Number of extensions: 3075
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)