Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G05f
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18210.1 68417.m02706 purine permease family protein similar ...    29   1.0  
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ...    27   5.4  
At2g17150.1 68415.m01980 RWP-RK domain-containing protein simila...    27   7.1  
At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family...    27   7.1  
At3g07920.1 68416.m00967 eukaryotic translation initiation facto...    26   9.4  
At1g68390.1 68414.m07813 expressed protein contains Pfam profile...    26   9.4  
At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 fam...    26   9.4  

>At4g18210.1 68417.m02706 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007,
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 390

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -1

Query: 419 KIGLINVITSFIAKWGFTVFLNQRV--NKNLRQDH 321
           K+  + VI+  +A WGFT ++ Q+   +KNL+++H
Sbjct: 335 KMNGLKVISMILAIWGFTSYVYQQYLDDKNLKKNH 369


>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
            DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
            [Arabidopsis thaliana]
          Length = 1576

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +1

Query: 40   CEASSKIVFALCQKPLVQRSCCAGRHAARSLMYDHYISPTRTETAYEAWQRYMV-WYGRE 216
            C A  K  F +   P  ++   A +H   SL  DH      T  A++ W+        +E
Sbjct: 812  CAADEKDPFTMPLSPGDRKKAAAAKHELASLYGDH-SDHLATVAAFQCWKNAKASGQAKE 870

Query: 217  YGSHYY 234
            + S Y+
Sbjct: 871  FCSKYF 876


>At2g17150.1 68415.m01980 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 909

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -1

Query: 392 SFIAKWGFTVFLNQRVNKNLRQDHTFEGYNFTMESGLE 279
           SF+  W      NQ  +      H  E YNF  + G++
Sbjct: 158 SFLTTWAQPHLFNQEYSSLAEYRHVSETYNFPADEGMK 195


>At1g13750.1 68414.m01614 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 613

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 154 PTRTETAYEAWQRYMVWYGREYGSHYYCTA 243
           P  T     A  R  VWY  +YG   +C A
Sbjct: 393 PAETMFYVPAQNRAKVWYSSDYGMFRFCVA 422


>At3g07920.1 68416.m00967 eukaryotic translation initiation factor 2
           subunit 2, putative / eIF-2-beta, putative similar to
           SP|P41035 Eukaryotic translation initiation factor 2
           subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains
           Pfam profile PF01873: Domain found in IF2B/IF5
          Length = 169

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 137 MTIIFPPHVLRRHTRRG 187
           +TII+PP VLR  T +G
Sbjct: 40  LTIIWPPQVLREETAKG 56


>At1g68390.1 68414.m07813 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function,
           DUF266; expression supported by MPSS
          Length = 408

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 146 IFPPHVLRRHTRRGNGIWYGMDASMGVITIAPR*SCPI 259
           +  PHV  RH R+G+  W  +D +M +  I+ R   P+
Sbjct: 268 LMQPHVQLRHWRKGSQ-WIEVDRAMALEIISDRIYWPL 304


>At1g35350.1 68414.m04383 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 747

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 180 GVATVYGMVWTRVWESLLLHR 242
           G+AT YG  W  V++  LLHR
Sbjct: 627 GLATFYGTYWDIVYDWGLLHR 647


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,816,028
Number of Sequences: 28952
Number of extensions: 208353
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)