Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G04f
         (316 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   4.0  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   4.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   7.1  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 206 LYDTVLPEKSVFVNKGR 256
           +YD  L ++S+ +N+GR
Sbjct: 254 MYDAFLIDQSLALNRGR 270


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 50  VPPPVLWAQRKEDVFLTFSVETKDPTIKIEKD 145
           VPPP  +   +  +F     +   P IK+E D
Sbjct: 20  VPPPFGYYHEEPPLFYEERPDFVAPYIKVEAD 51


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 83  PFVVPIILAVELKFR 39
           PF    +LA+E KFR
Sbjct: 121 PFTTQQLLALEKKFR 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,275
Number of Sequences: 336
Number of extensions: 1519
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)