Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301G04f
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 40 9e-05
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 28 0.38
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 27 0.51
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 0.51
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 2.0
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 2.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 2.7
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 24 4.7
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 24 4.7
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 24 4.7
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 23 8.3
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 23 8.3
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 39.9 bits (89), Expect = 9e-05
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Frame = +2
Query: 56 PPVLWAQR--KED-----VFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALY 211
P VLWAQR K+D ++LT + + DP I + + + + N + V I +
Sbjct: 8 PEVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGA-NAHYAVQIDFF 66
Query: 212 DTVLPEKSVFVNKGRCXEMILRKEKTDGPFWPTLT 316
+ EKS + GR +L K++ FWP LT
Sbjct: 67 KDIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLT 101
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.9 bits (59), Expect = 0.38
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 291 SVFSFRNIISXHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTES 142
S+F F I L L TK++FS + ++ ++ C SG + YTES
Sbjct: 140 SIF-FHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIYMSVGYTES 188
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.5 bits (58), Expect = 0.51
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 156 KYTESFSILIVGSLVSTLNVRKTSSFRCAHNTG 58
+Y E L V +++ST V+ SF+CAH G
Sbjct: 469 RYAELGRWLDVATILSTAEVQSQRSFQCAHLYG 501
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 0.51
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 165 SPLKYTESFSILIVGSLVSTLNVRKTSSFRCAHNTGGGTEISL 37
SPLKYT S S +G + +L KT + + G ++ +L
Sbjct: 516 SPLKYTHSASKSFIGEVQDSLQALKTKAHKPRSIGGDSSQTTL 558
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 2.0
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 303 QNGPSVFSFRNIISXHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIV 124
Q + S R +IS +LF G + + T C+++SGA + + T + S+LI+
Sbjct: 357 QTNNLIRSNRELISLGAANIGSSLFCGLPICGGYLRTKCNIMSGARTQVA-TIACSVLIL 415
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 2.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 279 FRNIISXHLPLFTKTLFSGRTVSYSAIVTSCSLL 178
FR+ ++ PLF + +F+ SY+ + ++L
Sbjct: 469 FRSAMAASFPLFARAMFNNTGPSYAPVAWGSTIL 502
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 2.7
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -2
Query: 228 SGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIVGS---LVSTLNVRKTSSFRCAHNTG 58
S T+S S+ S S S S K + SFS + S STL +SS R A ++
Sbjct: 339 SSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398
Query: 57 GGTEIS 40
+ +S
Sbjct: 399 HSSSLS 404
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 2.7
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -2
Query: 294 PSVFSFRNIISXHLPLFTKTLFSGRTVSYSA--IVTSCSLLSGAPSPLKYTESFSILIVG 121
PS F+ I S L +T S S+ + + S SG+ S YT + S
Sbjct: 699 PSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTT 758
Query: 120 SLVSTLNVRKTSSF 79
S VS+ +SSF
Sbjct: 759 SSVSSRQSSSSSSF 772
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 24.2 bits (50), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 108 TLNVRKTSSFRCAHNTGGGTEISLD 34
T+N++ FR GG+E+S+D
Sbjct: 589 TINLKAVEGFRTVELKEGGSELSVD 613
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 4.7
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -2
Query: 273 NIISXHLPLFTKTLFSGRTVSYSA----IVTSCSLLSGAPSPLK 154
N++ L + K LF +T S S +++SC+L+SGA L+
Sbjct: 274 NVLITALLISKKVLFLTKTSSASVLADFVLSSCALVSGATGLLQ 317
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 24.2 bits (50), Expect = 4.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 216 VSYSAIVTSCSLLSGAPSPLKYTESFSILI 127
+ YS+I TSCS+ + L SF +L+
Sbjct: 505 ILYSSICTSCSINESLKTKLPKLISFGLLL 534
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 23.4 bits (48), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 175 RRTFTSKIH*ILFYFDRRIFSFHTKCKKNIFLSLC 71
R TF + + YF R F + K+IFL LC
Sbjct: 187 RITFLAFVIAPYIYFSVRCFKKNVNNPKDIFLHLC 221
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 140 KDSVYFRGEGAPDNRLHEVTIALYDTVL 223
K V+ D +HEV + L+DT+L
Sbjct: 106 KAVVFVLNSATIDRDVHEVGLMLFDTIL 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,883
Number of Sequences: 5004
Number of extensions: 25644
Number of successful extensions: 67
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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