Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301G04f
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646... 47 4e-06
03_03_0158 - 14951504-14951568,14952722-14952797,14952876-149529... 43 6e-05
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782... 29 0.77
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 27 4.1
07_01_1033 + 8958317-8959254,8959438-8959673,8960440-8960486,896... 26 5.4
06_01_1007 + 7846266-7846526,7848368-7848420,7849231-7849432,784... 26 7.1
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 26 7.1
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 26 7.1
01_06_0328 + 28507942-28508610,28509669-28510826 26 7.1
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 26 7.1
11_06_0736 - 26784531-26785814 25 9.4
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 25 9.4
>03_05_0537 +
25363026-25363217,25363672-25363828,25364660-25364694,
25364803-25364848,25365277-25365311
Length = 154
Score = 46.8 bits (106), Expect = 4e-06
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 56 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEK 232
P VLWAQR E ++LT S+ + KD +K E + F + T+ L+D+VLPE
Sbjct: 7 PEVLWAQRSEKIYLTISLPDAKDVVLKTEPQGL-FSFLAVANGEPFSFTLELFDSVLPEG 65
Query: 233 SVFVNKGRCXEMILRKEKTDGPFWPTL 313
S K +I +K +W L
Sbjct: 66 SKTKTKMGLRNIICSIQKEKKGWWKRL 92
>03_03_0158 -
14951504-14951568,14952722-14952797,14952876-14952943,
14952997-14953156,14953239-14953425,14953982-14953986
Length = 186
Score = 42.7 bits (96), Expect = 6e-05
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +2
Query: 56 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVY-FRGEGAPDNRLHEVTIALYDTVLPE 229
P WAQR + VFLT + + +D + ++ + + F +G D+ +E+ + L+D V E
Sbjct: 5 PSTKWAQRSDKVFLTIELPDARDVKLNLKPEGQFIFSAKGPADDTPYELDLELFDAVNVE 64
Query: 230 KSVFVNKGRCXEMILRKEKTDGPFWPTL 313
+S R +++ K + +WP L
Sbjct: 65 ESKAAVAARSICYLIK--KAESKWWPRL 90
>01_06_0311 -
28377414-28377623,28377758-28377856,28378116-28378253,
28378697-28378827,28378920-28379066,28379164-28379293,
28379625-28379654,28380138-28380416
Length = 387
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 92 FLTFSVETKDPTIKIEKDSVYFRGEGAPDNRL 187
FL TKD T+K+ +D + EG PD+R+
Sbjct: 341 FLYEKASTKDKTLKLYEDGYHSILEGEPDDRI 372
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 134 IEKDSVYFRGEGAPDNRLHEVTIALYDTVL----PEKSVFV 244
+EK + F G D L +V + LYD VL EK V+V
Sbjct: 215 VEKKKLPFSGAPQDDRNLPDVHLGLYDDVLVFDNVEKKVYV 255
>07_01_1033 +
8958317-8959254,8959438-8959673,8960440-8960486,
8960683-8960733
Length = 423
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 68 WAQRKEDVFLTFSVETKDPTIKIEKDSVYFRGEGAPDNRLHEV 196
W +RK SV PTI ++ D VYF ++L V
Sbjct: 307 WVRRKPSKAALRSVAMVFPTISMDDDHVYFFSIAGSTDKLEAV 349
>06_01_1007 +
7846266-7846526,7848368-7848420,7849231-7849432,
7849526-7849609,7850005-7850188,7850605-7850741,
7850875-7850939,7851093-7851762
Length = 551
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 183 LLSGAPSPLKYTESFSILIVGSLVSTLNVRKTSSFRCAHNTGGG 52
++SGA +K ES S+L + L + L R AH GGG
Sbjct: 404 VVSGAQLHVKAHESTSVLHLRLLYTELPGHSVVQSRWAHGGGGG 447
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 283 FLP*YHLXTSALIYKNTLFRKNSVVQCYR 197
F P YHL S+L+Y+ +L + V+ ++
Sbjct: 303 FFPRYHLDYSSLLYRKSLLGRPIVMDVFQ 331
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2
Query: 246 FTKTLFSGRTVSYSAIVT-SCSLLSGAPSPLKYTESFSILIVGSLV 112
F + F G +++ C+ P+P YT++FS+ I G V
Sbjct: 1753 FDNSSFDGNPKLCGPMISRQCNSAKAIPTPAFYTDNFSVNIFGITV 1798
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 255 LPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKY 151
+P + FSG +V Y CS + AP P +
Sbjct: 127 IPQISWLFFSGISVDYLVFFLRCSFTTFAPKPANF 161
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 260 HICPYLQKHSFPEEQCRTVLSLPHVVYYPAHLHL 159
H+ + Q+ P RTV+ +P V YP + H+
Sbjct: 315 HMRVWTQQDDTPATWLRTVIRIPLAVPYPDYSHI 348
>11_06_0736 - 26784531-26785814
Length = 427
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 92 FLTFSVETKDPTIKIEKDSVYFRG-EGAPDNRLHEVTIAL 208
F+TF + K+P + D+ RG +G P + T+A+
Sbjct: 173 FITFKSDPKNPAVIAWSDTAATRGKDGKPVGTVGSTTVAI 212
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 18 LLKI*CLAKFQFHRQYYGHNERKMFFLH 101
LL I CL+K+Q R Y +N ++ +H
Sbjct: 238 LLVIFCLSKYQERRSRYDYNRSQLARVH 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,785,249
Number of Sequences: 37544
Number of extensions: 160341
Number of successful extensions: 349
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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