Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301G04f
(316 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 29 0.79
SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4) 29 1.0
SB_284| Best HMM Match : rve (HMM E-Value=0.001) 29 1.0
SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38) 27 3.2
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 27 3.2
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09) 27 4.2
SB_7761| Best HMM Match : Drf_FH1 (HMM E-Value=8.2) 27 4.2
SB_7582| Best HMM Match : 5-nucleotidase (HMM E-Value=0) 27 4.2
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 27 4.2
SB_30290| Best HMM Match : I-set (HMM E-Value=1.4e-21) 26 5.6
SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.4
SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08) 26 7.4
SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08) 26 7.4
SB_53160| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09) 25 9.8
SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12) 25 9.8
SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_12250| Best HMM Match : zf-CCHC (HMM E-Value=0.0097) 25 9.8
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 25 9.8
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 29.1 bits (62), Expect = 0.79
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 119 DPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCXEMILRKEKTDGP 298
DP ++ +++ +G+ PD R + +A+Y V E F+ G E I+ + G
Sbjct: 195 DPPVETTSNNMRKKGKPNPDQRYFNLVVAIYAYV--EHESFLICGSASERIIVRASNPGQ 252
Query: 299 F 301
F
Sbjct: 253 F 253
>SB_24668| Best HMM Match : RVT_1 (HMM E-Value=0.4)
Length = 523
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 95 LTFSVETKDPTIKIEKDSVYFRGEGAPDNRLH-EVTIALYDTVLPEKSV 238
L+ S T DP + F+GEG PD +LH E+ + +LP + V
Sbjct: 160 LSDSSPTSDPVSEFPD---VFKGEGKPDQKLHLELDATVPPVILPVRKV 205
>SB_284| Best HMM Match : rve (HMM E-Value=0.001)
Length = 1201
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 95 LTFSVETKDPTIKIEKDSVYFRGEGAPDNRLH-EVTIALYDTVLPEKSV 238
L+ S T DP + F+GEG PD +LH E+ + +LP + V
Sbjct: 417 LSDSSPTSDPVSEFPD---VFKGEGKPDQKLHLELDATVPPVILPVRKV 462
>SB_57394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 314 LASARMDHL-FFPSVISSPHICPYLQKHSFPEEQCRTVLSL 195
LA+ R D PS I+SP+ P Q FP R+ +SL
Sbjct: 164 LANERNDQRSLIPSAITSPYYAPRAQATGFPNNVQRSQISL 204
>SB_35900| Best HMM Match : EGF_CA (HMM E-Value=2.5e-38)
Length = 839
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 167 GAPDNRLH-EVTIALYDTVLPEKSVFVNKGRCXEMILRKEKTDGP 298
GAPD L E T+AL T+ PE +V E + E T P
Sbjct: 410 GAPDTTLAPETTVALESTMTPESTVPPETTVATETTVAPETTAAP 454
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 167 GAPDNRLH-EVTIALYDTVLPEKSVFVNKGRCXEMILRKEKTDGP 298
GAPD L E T+AL T+ PE +V E + E T P
Sbjct: 2106 GAPDTTLAPETTVALESTMTPESTVPPETTVATETTVAPETTAAP 2150
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 290 LFFPSVISSPHICPYLQKHSFPEE-QCRTVLSLPHVV 183
+F+P+VIS+ + + HS +E +CR + L HV+
Sbjct: 18 IFWPAVISNQELYKKTRSHSVVDEIKCRRMRWLGHVL 54
>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
Length = 372
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 189 CSLLSGAPSPLKYTESFSILIVGSLVSTLNVRKTSSFRCAHNTGGG 52
CS G P L + F + I L+ T+ V++ + F C + G
Sbjct: 114 CSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTCDKSVVAG 159
>SB_7761| Best HMM Match : Drf_FH1 (HMM E-Value=8.2)
Length = 233
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 191 EVTIALYDTVLPEKSVFVNKGRCXEMILRKEKTDGP 298
E T+A TV+PE +V + E + E TD P
Sbjct: 87 ETTVAPETTVVPETTVALETTMAPETTVAAESTDAP 122
>SB_7582| Best HMM Match : 5-nucleotidase (HMM E-Value=0)
Length = 441
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -2
Query: 222 RTVSYSAIVTSCSLLSGAPSPLKYTESFSILI 127
+++ ++ ++ L+G SP+KY E+F+I +
Sbjct: 144 KSIDHNGLMIPRMALTGGTSPVKYLEAFNITL 175
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 191 EVTIALYDTVLPEKSVFVNKGRCXEMILRKEKTDGP 298
E T+A TV+PE +V + E + E TD P
Sbjct: 1533 ETTVAPETTVVPETTVALETTMAPETTVAAESTDAP 1568
>SB_30290| Best HMM Match : I-set (HMM E-Value=1.4e-21)
Length = 250
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 252 PLFTKTLFSGRTVSYSAIVTSCSLLSGAPSP 160
P FT +L S R V+ + VT SG P+P
Sbjct: 76 PAFTSSLSSSRDVAENGDVTVTCSASGRPAP 106
>SB_49862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 243 TKTLF-SGRTVSYSAIVTSCSLLSGAPSPLKYTE 145
+KT+ SG+ V ++ ++T+C L+G PS +K E
Sbjct: 221 SKTIMVSGKNV-HNLLITTCKNLNGKPSGVKKAE 253
>SB_23661| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
Length = 490
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 231 FSGRTVSYSAIVTSCSLLSGAPSPLKYTE 145
F GR SYS C +LS P PL E
Sbjct: 392 FLGRFSSYSLSRHCCLILSNVPGPLSSLE 420
>SB_40048| Best HMM Match : UPF0089 (HMM E-Value=9.3e-08)
Length = 535
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 231 FSGRTVSYSAIVTSCSLLSGAPSPLKYTE 145
F GR SYS C +LS P PL E
Sbjct: 392 FLGRFSSYSLSRHCCLILSNVPGPLSSLE 420
>SB_53160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 252 PLFTKTLFSGRTVSYSAIVTSCSLLSGAPSP 160
P FT +L S R V+ + VT SG P+P
Sbjct: 169 PAFTSSLSSSRDVAENDDVTVTCSASGRPAP 199
>SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09)
Length = 240
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 252 PLFTKTLFSGRTVSYSAIVTSCSLLSGAPSP 160
P FT +L S R V+ + VT SG P+P
Sbjct: 152 PAFTSSLSSSRDVAENDDVTVTCSASGRPAP 182
>SB_43818| Best HMM Match : NDT80_PhoG (HMM E-Value=7.6e-12)
Length = 347
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 119 DPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCXEMIL 274
DP ++ +++ +G+ PD R + +A+Y V E F+ G E I+
Sbjct: 183 DPPVETTSNNMRKKGKPNPDQRYFNLVVAIYAYVKHES--FLICGSASERII 232
>SB_22149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 185 LHEVTIALYDTVLPEKSVFVNKGRCXEMILRK 280
+H + +YD+VLP+K+ + K C ++L+K
Sbjct: 56 VHPEKLYIYDSVLPDKATKL-KETCQLLLLKK 86
>SB_12250| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)
Length = 349
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 89 VFLTFSVETKDPTIKIEKDSVYFRGEGAPDNRLH-EVTIALYDTVLPEKSV 238
V L+ S T DP + F+GEG D +LH E+ + +LP + V
Sbjct: 201 VSLSDSSPTSDPVSEFPD---VFKGEGKLDQKLHLELDATVPPVILPVRKV 248
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -2
Query: 246 FTKTLFSGRTVSYSAIVTSCSLLSGAPSPLKYTESFSILIVGSLVSTLNVRKTSSFR 76
+T T T SY+ TS + + S YT + S S ST + T+S+R
Sbjct: 32 YTSTTSYTSTTSYTP-TTSYTCTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYR 87
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,100,322
Number of Sequences: 59808
Number of extensions: 192550
Number of successful extensions: 449
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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