Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G04f
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    44   3e-05
U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    26   5.0  
U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst compone...    26   5.0  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    26   5.0  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    26   5.0  
U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class c...    26   5.0  
AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.      26   5.0  
Z83731-1|CAB06022.2|  208|Caenorhabditis elegans Hypothetical pr...    25   8.7  
Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical p...    25   8.7  
AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical ...    25   8.7  
AF100655-10|ABO16451.1|  246|Caenorhabditis elegans Hypothetical...    25   8.7  
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    25   8.7  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +2

Query: 56  PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEK 232
           P VLWAQR+  V+LT  V E K   +K E + ++F+G    D   +E T+  +D + P  
Sbjct: 5   PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62

Query: 233 SVFVNKGRCXEMILRKEKTDGPFWPTL 313
                       I  ++KT   +WP L
Sbjct: 63  VKHTGSSTRVVEITVQKKTPA-WWPRL 88


>U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical
           protein C33D12.2 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 146 SVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFV 244
           +V+F G+ +  N  HE+TI     V+P K+V V
Sbjct: 16  TVFFSGKSSEKNVCHEITIKHNVVVVPNKNVRV 48


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 155 FRGEGAPDNRLHEVTIALYDTVLPEKSVFVNKGRCXEMILRKEKTDGP 298
           +  E  PDN +    I  Y  + P   +F+N G    +  R++K + P
Sbjct: 154 YTSECEPDNHIVTYIIDNYSRLFPVLCLFLNIGIILYLSKRRKKMENP 201


>U80437-8|AAB37623.1|  630|Caenorhabditis elegans Exocyst component
           protein 7 protein.
          Length = 630

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 213 SYSAIVTSCSLLSGAPSPLKYTESFSILIVGSLVSTLNV 97
           +YS ++ +C  L   P  +KYTE+   + + +L S+  +
Sbjct: 591 NYSQLLDTCQRLHVFPQGIKYTENTFEMAIRNLFSSARI 629


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 314 LASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTV 204
           L S R D    P++   P   PY  +H  P+  CR +
Sbjct: 541 LGSPRPDR--HPTICEKPTFYPYANRHYNPDPLCRQI 575


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 314 LASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTV 204
           L S R D    P++   P   PY  +H  P+  CR +
Sbjct: 574 LGSPRPDR--HPTICEKPTFYPYANRHYNPDPLCRQI 608


>U58751-1|AAB00656.1|  577|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform a protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 314 LASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTV 204
           L S R D    P++   P   PY  +H  P+  CR +
Sbjct: 451 LGSPRPDR--HPTICEKPTFYPYANRHYNPDPLCRQI 485


>AF129110-1|AAD37120.1|  577|Caenorhabditis elegans Pct-1 protein.
          Length = 577

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 314 LASARMDHLFFPSVISSPHICPYLQKHSFPEEQCRTV 204
           L S R D    P++   P   PY  +H  P+  CR +
Sbjct: 451 LGSPRPDR--HPTICEKPTFYPYANRHYNPDPLCRQI 485


>Z83731-1|CAB06022.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.3 protein.
          Length = 208

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 41  EISVPPPVLWAQRKEDVFLTFSVETKDPTIKIEKDS 148
           ++S   P LW + K D+ +       + TIK E+ +
Sbjct: 57  DVSKKVPELWNEHKPDLVIHLGAHPVEKTIKFEQQA 92


>Z35663-12|CAA84736.2|  718|Caenorhabditis elegans Hypothetical
           protein T04A8.15 protein.
          Length = 718

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 212 DTVLPEKSVFVNKGRCXEMILRKEKTDGP 298
           +TVL E  + +      EM++R EK DGP
Sbjct: 653 NTVLHEHILSLQPVSLEEMLIRLEKADGP 681


>AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical
           protein B0019.1 protein.
          Length = 724

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 120 SLVSTLNVRKTSSFRCAHNT 61
           SL+  LNVR T    C +NT
Sbjct: 116 SLIQELNVRTTQQLTCGNNT 135


>AF100655-10|ABO16451.1|  246|Caenorhabditis elegans Hypothetical
           protein C44C8.7 protein.
          Length = 246

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 288 VFSFRNIISXHLPLFTKTLFSGRTVSYSAIVTSCSLLSGAPSPLK 154
           VF++   +   L      LF GRTV  +     C+ +   PS +K
Sbjct: 179 VFNYDRKMHEALKYLLGKLFGGRTVKVNRFAIECATVIRIPSTVK 223


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 29  IMSSEISVPPPVLWAQRKEDVFLTFSVETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIA 205
           +  S +S  P VLW  +KE   L+FS        K++K +    G   PD    +V I+
Sbjct: 43  LSKSTVSARPNVLWCYKKE---LSFSTHRAKKAKKMKKATTTISG-SLPDADPFDVFIS 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,568,930
Number of Sequences: 27780
Number of extensions: 146058
Number of successful extensions: 364
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)