Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G03f
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    35   0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   9.5  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
 Frame = -3

Query: 280 PIFLIPFXXXXXXXXXXIRPGTLAVRLTANIIAGHLLITLL-----RRTGTN-ISFYXXX 119
           P  LIP            R  +L +RL ANIIAGHL +++L        G N I+F    
Sbjct: 159 PTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMGLNLITFIIGF 218

Query: 118 XXXXXXXXXXXLESAVAIIQSYVITIL 38
                      LE  +A IQ+YV  IL
Sbjct: 219 LPITVLVAISLLEFGIAFIQAYVFAIL 245


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 316 FVFLIHPYNINLSHRGIDKDKDIXK 390
           FV   H   I LSH+G+D   ++ K
Sbjct: 688 FVLDGHKLEIKLSHQGVDAAAEVRK 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,471
Number of Sequences: 5004
Number of extensions: 12676
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)