Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G03f
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.8  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    20   8.7  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    20   8.7  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    20   8.7  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    20   8.7  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    20   8.7  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    20   8.7  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    20   8.7  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 141 LVPVLLNNVINKCPAIMLAVNRT 209
           L+P +LNN  N+C +  + +  T
Sbjct: 56  LLPEVLNNHCNRCTSRQIGIANT 78


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 213 KVPGRIIFLMVSIITINGIKNIGCSLWN 296
           KV  R+  LM+S+IT        C+  N
Sbjct: 635 KVADRVSMLMISVITARHAGEYVCTAEN 662


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 NTIYSNY*NHQKYYST 222
           N  YSNY N+   Y+T
Sbjct: 88  NYKYSNYNNYNNNYNT 103


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 NTIYSNY*NHQKYYST 222
           N  YSNY N+   Y+T
Sbjct: 88  NYKYSNYNNYNNNYNT 103


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 NTIYSNY*NHQKYYST 222
           N  YSNY N+   Y+T
Sbjct: 88  NYKYSNYNNYNNNYNT 103


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 NTIYSNY*NHQKYYST 222
           N  YSNY N+   Y+T
Sbjct: 88  NYKYSNYNNYNNNYNT 103


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 NTIYSNY*NHQKYYST 222
           N  YSNY N+   Y+T
Sbjct: 88  NYKYSNYNNYNNNYNT 103


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 NTIYSNY*NHQKYYST 222
           N  YSNY N+   Y+T
Sbjct: 88  NYKYSNYNNYNNNYNT 103


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 269 NTIYSNY*NHQKYYST 222
           N  YSNY N+   Y+T
Sbjct: 88  NYKYSNYNNYNNNYNT 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,238
Number of Sequences: 438
Number of extensions: 1013
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)