Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G03f
         (390 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    36   0.007
At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-contain...    26   7.8  

>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 36.3 bits (80), Expect = 0.007
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
 Frame = -3

Query: 280 PIFLIPFXXXXXXXXXXIRPGTLAVRLTANIIAGHLLITLLRRTG-----TNISFY--XX 122
           P+ L PF           R  +L +RL AN++AGH L+ +L          N  FY    
Sbjct: 286 PLPLAPFLVLLELISYCFRALSLGIRLFANMMAGHSLVKILSGFAWTMLCMNDIFYFIGA 345

Query: 121 XXXXXXXXXXXXLESAVAIIQSYVITILRTLYYSE 17
                       LE  VAI+Q+YV TIL  +Y ++
Sbjct: 346 LGPLFIVLALTGLELGVAILQAYVFTILICIYLND 380


>At2g30880.1 68415.m03763 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 504

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 192 LAVNRTAKVPGRIIFLMVSIITINGIKNIGCSLWN 296
           L+++RTA +PG  +  M     +N    +G + WN
Sbjct: 418 LSISRTASIPGENVVHMSEEQVVNAQPPVGENEWN 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,611,642
Number of Sequences: 28952
Number of extensions: 57322
Number of successful extensions: 148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)