Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G02f
         (472 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   2.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   4.3  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   5.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   5.7  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.6  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   7.6  

>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
 Frame = +2

Query: 11  GDSRRLTNGATRTRHTELR------RYYYRRRPTELQGRMARTYRNTADGATHAI 157
           G+++R     TR +  EL       RY  RRR  E+   +  T +N      H +
Sbjct: 218 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTNKNLVSKPPHEV 272


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 153 LYSVPLPGSGSVLAFILNMLRG 218
           LY +   GS  V+AF    LRG
Sbjct: 616 LYQIQEDGSRGVIAFASRSLRG 637


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 284 LQIRVREANRPRGPFTSQP*PKYS*VRAKPCKC*VGCL 397
           ++IR+ +  +  GP   QP  +    + KP  C V  L
Sbjct: 195 VEIRIPDVIKTSGPHKFQPLLRLPKFKKKPLLCVVSTL 232



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 170 ARLGLSASVYTEHAT 214
           A  G+  S+YT H+T
Sbjct: 275 AESGVDTSIYTAHST 289


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 315 LGDPSRHNLNQS 350
           L DPS+H LN +
Sbjct: 264 LSDPSKHGLNDA 275


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 467 PXNTAS*CFQSLYVRVSSTRPL 402
           P NT + C Q + V +S TR L
Sbjct: 226 PPNTENNCAQPVVVIMSPTREL 247


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 319 PRPVRFAYAYLKVSTMRCQYRSEP 248
           P P R  Y ++K ++ + Q   EP
Sbjct: 117 PPPARSPYEWIKKTSYQSQPNPEP 140


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 319 PRPVRFAYAYLKVSTMRCQYRSEP 248
           P P R  Y ++K ++ + Q   EP
Sbjct: 117 PPPARSPYEWIKKTSYQSQPNPEP 140


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  ARLVQDIQNFGGIITEDDLRNYRVE 110
           ++ + D Q  G ++   + R YRVE
Sbjct: 184 SKKIDDNQKVGYVVEGRNYRKYRVE 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,305
Number of Sequences: 336
Number of extensions: 2135
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)