Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G02f
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    62   4e-11
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    53   3e-08
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.20 
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.3  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    26   3.3  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    25   4.4  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   4.4  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   4.4  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.8  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   5.8  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.7  

>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
 Frame = +3

Query: 3   GPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSG 182
           GPE  + G +  RLV+ +Q  GGI+T +D+ N+ V  +EPI     ++  + +   P SG
Sbjct: 284 GPEVFYTGKIAERLVKFVQQQGGILTMEDMANFSVVVEEPIYGNFYDREVI-TCGSPCSG 342

Query: 183 SVLAFILNMLRGWIGVDTVAPVG---SDLYWHRIVETFKYAYAKRTGLGDPSRHNLNQSI 353
             L   LN+L      +  + +G   +D+  H ++ET K+  A RT L DP+ +N    +
Sbjct: 343 EALILGLNVLSKVDLSEGTSILGCEMTDIGVHHLIETMKWMSAGRTVLADPTFYNNTDHV 402

Query: 354 LEL 362
            +L
Sbjct: 403 EQL 405


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 52.8 bits (121), Expect = 3e-08
 Identities = 37/108 (34%), Positives = 55/108 (50%)
 Frame = +3

Query: 3   GPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSG 182
           G E  + G LT  +V+ IQ+ GGI+T +D  NY   + + +       H +Y+  LP SG
Sbjct: 266 GIEPFYRGELTNSMVKFIQDNGGIVTVEDFGNYSTVFADALHTSY-RGHDVYTCTLPTSG 324

Query: 183 SVLAFILNMLRGWIGVDTVAPVGSDLYWHRIVETFKYAYAKRTGLGDP 326
             L   LN+L G+  ++T + +      H  VE  K+  A RT  GDP
Sbjct: 325 PALIEGLNILDGY-PLNTPS-LAFPKRLHLEVEAMKWLSAGRTQFGDP 370


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
 Frame = +3

Query: 63  FGGIITEDDLRNYRVEWQEPI----AIPLTEQHTLYSVPLP---------GSGSVLAFIL 203
           FGG +  D ++  RVEW +P     A+P+ E+       +P           G V AF  
Sbjct: 251 FGGDVEIDSIKVNRVEWDDPSGKLNAMPVDEKTIPPEERIPRFTAASWKYKDGGVGAFTH 310

Query: 204 NMLRGWIGVDTVAPVGSDLYWHRIVETFK 290
           N+       DT   V +D Y+ RIV+ ++
Sbjct: 311 NITLQGAKYDTCIEVQADGYYLRIVDLYE 339


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 54  IQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVP 167
           I+NF   +  ++  N   EW + I++   E++ +Y +P
Sbjct: 506 IENFISELQAEEEENNITEWSDIISVRNDEENQIYELP 543


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 129 IPLTEQHTLYSVPLPGSGSV 188
           IP+TE+H++ S+ +P S S+
Sbjct: 359 IPMTEEHSVSSISVPKSSSL 378


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 14  DSRRLTNGATRTRHTELRRYYYRR 85
           D R  T   T+TR TE   YY +R
Sbjct: 30  DMRPKTEDVTKTRGTEFEDYYLKR 53


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 51  DIQNFGGIITEDDLRNYR 104
           D+Q + G+   DDLRNY+
Sbjct: 937 DLQQWNGLWPSDDLRNYQ 954


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 285 FKYAYAKRTGLGDPS 329
           F YAY  RT LGDP+
Sbjct: 288 FAYAYDNRTTLGDPT 302


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 263 LASHRRNLQIRVREANRPRGPFTSQP*PKYS 355
           LA+HR+ L     EANRPRG   +     YS
Sbjct: 228 LAAHRKELH----EANRPRGGLNNSSRSAYS 254


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +3

Query: 231 DTVAPVGSDLYWHRIVETFKYAYA 302
           D+++PV  +L+ +RI+ET+ + ++
Sbjct: 278 DSLSPVPEELFLNRIIETWLFFFS 301


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 27  SLTARLVQDIQNFGGIITEDDLRNYRVEW 113
           SL    ++ +  FGG +T  ++ NY   W
Sbjct: 440 SLVPPFIKFLGKFGGALTVQEIENYCQNW 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,431
Number of Sequences: 5004
Number of extensions: 35953
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)