Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301G02f
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0108 - 22830485-22830706,22830817-22830954,22831091-228313... 71 5e-13
01_01_0350 + 2782189-2782650,2783778-2783798,2787172-2787690,278... 70 8e-13
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 69 3e-12
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 32 0.27
05_05_0351 - 24319356-24319385,24319470-24320902,24321011-243211... 29 1.9
06_01_0222 - 1699009-1699698,1700922-1701247,1701342-1701513 28 3.3
04_04_1285 - 32382614-32382720,32383032-32383710,32383816-323839... 28 4.4
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 28 4.4
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 27 5.8
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 27 5.8
11_06_0530 + 24696399-24697592 27 7.6
01_07_0169 + 41650339-41651217 27 7.6
>04_04_0108 -
22830485-22830706,22830817-22830954,22831091-22831355,
22831490-22831725,22831906-22832421,22834960-22835300,
22835453-22835459
Length = 574
Score = 70.9 bits (166), Expect = 5e-13
Identities = 41/121 (33%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = +3
Query: 3 GPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSG 182
GP+ + G++ +L +DIQ GGIIT +DL+ Y+V+ + P+ + T+ S+P P +G
Sbjct: 224 GPDVFYKGAVGDQLAKDIQEVGGIITMEDLKKYQVKIRRPL-LENVLGLTVLSMPPPSAG 282
Query: 183 SV-LAFILNMLRGWIGVDTVAPVGSDLYWHRIVETFKYAYAKRTGLGDPSRHNLNQSILE 359
L +LN+L + G+ A L HR++E+ K+ +A R LGDP N+N+ + +
Sbjct: 283 GAGLMLVLNILTQY-GLP--AGFSGSLGIHRLIESLKHYFAIRMNLGDPEFVNVNEVVSD 339
Query: 360 L 362
+
Sbjct: 340 M 340
>01_01_0350 +
2782189-2782650,2783778-2783798,2787172-2787690,
2787780-2788015,2788110-2788242,2788482-2788547,
2789200-2789454
Length = 563
Score = 70.1 bits (164), Expect = 8e-13
Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Frame = +3
Query: 3 GPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSG 182
G EA + G++ R V D++ GGI DDLR Y+VE + + +T +P P SG
Sbjct: 270 GVEAFYGGAVGERFVADVRRAGGIAKVDDLRAYKVEVSDAMRSD-AMGYTFLGMPPPSSG 328
Query: 183 SV-LAFILNMLRGWIGVDTVAPVGSDLYWHRIVETFKYAYAKRTGLGDPSRHNLNQSILE 359
V +A ILN+L G+ ++ + L HR +E FK+ A R LGDP N+ ++ E
Sbjct: 329 GVGVALILNILSGYKSLEFLK---GFLGLHRFIEAFKHMLAIRMDLGDPDYVNITGNVSE 385
Query: 360 L 362
+
Sbjct: 386 M 386
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 68.5 bits (160), Expect = 3e-12
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Frame = +3
Query: 3 GPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSG 182
G EA + G++ R V D++ GGI T DDLR Y+VE + + +T +P P SG
Sbjct: 267 GVEAFYGGAIGERFVADVRRAGGIATVDDLRAYKVEVSDAMRAD-AMGYTFLGMPPPSSG 325
Query: 183 SV-LAFILNMLRGWIGVDTVAPVGSDLYWHRIVETFKYAYAKRTGLGDPSRHNLNQSILE 359
+V +A +LN+L G+ ++ + L HR +E K+ A R LGDP N+ ++ +
Sbjct: 326 TVGMALVLNILDGYKSLEFLK---GFLGVHRFIEALKHMLAIRMALGDPDYVNVAGNVSQ 382
Query: 360 L 362
+
Sbjct: 383 M 383
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 31.9 bits (69), Expect = 0.27
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 424 GCRPRALYTXAA--HSAFARFCSNSRILWLRL*REGSPRPVRFAYAYL 287
G P A++ H A AR R +W R+ REG+P P AYA L
Sbjct: 110 GYAPSAIHYGVVLRHLAGARRWGELRRVWARMAREGAPPPTNQAYAAL 157
>05_05_0351 -
24319356-24319385,24319470-24320902,24321011-24321180,
24321302-24321485,24323094-24323264,24324002-24324125
Length = 703
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = -1
Query: 382 AFARFCSNSRILWLRL*REGSPRPVRFAYAYLKVSTMRCQYRSEPTGATVSTPIH--PRS 209
A++R + L + + SPR + +YL+ + ++ YR +P +T+S H +
Sbjct: 326 AYSRLRLDGGKLQFEVAKGDSPRDSHLSRSYLEKNPLKPDYRYQPFDSTISLDPHQYSKK 385
Query: 208 MFSINASTEPEPGRGTEYSVCCSVS 134
+ + +TE P + E VS
Sbjct: 386 LSAYGGATENLPHKHQEEKSSSHVS 410
>06_01_0222 - 1699009-1699698,1700922-1701247,1701342-1701513
Length = 395
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +1
Query: 283 PSNTRTRSEQASGTLHVTTLTKVFLS*SKTLQMLSGLPXYRGRVDDTRTYNDWKHYE 453
P+ TRT A+G T K S S + M L Y+GR + +DW +E
Sbjct: 81 PTGTRTNRATAAGFWKATGRDKAIYSSSNRIGMRKTLVFYKGRAPHGQK-SDWIMHE 136
>04_04_1285 -
32382614-32382720,32383032-32383710,32383816-32383926,
32384007-32384065,32384163-32384271,32384387-32384575,
32384650-32385476,32385501-32385633
Length = 737
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 311 RPRGPFTSQP*PKYS*VRAKPCKC*VGCLRIEGAWTTPAHTMI 439
RPR + P P+ + V P C +GC R TTP+ +
Sbjct: 19 RPRRDGDAPPEPQPARVGLNPADCDLGCNRSRALLTTPSSVAV 61
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +2
Query: 62 LRRYYYRRRPTELQG---RMARTYRNTADG 142
LRR + RRR LQG R AR+Y +++DG
Sbjct: 31 LRRVHLRRRACGLQGDHYRAARSYGSSSDG 60
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 256 SEPTGATVSTPIHPRSMFSINASTEPEPGR 167
S P G+T+ P H RS+ S A EP R
Sbjct: 30 SLPQGSTIVPPSHSRSICSFGAQESSEPIR 59
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 162 VPLPGSGSVLAFILNMLRGWIGVDTVAPVGSDLYW 266
VPL G V +L+ G + VAPV S L+W
Sbjct: 183 VPLDGDDDVTEEVLDPDFGEAAIGRVAPVDSGLWW 217
>11_06_0530 + 24696399-24697592
Length = 397
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -2
Query: 213 VACS----V*TLALSPSRAGAPNIACVAPSAVL 127
V+CS V TLAL RAGAP ++ P+A L
Sbjct: 67 VSCSGDGRVVTLALGDPRAGAPGLSGALPAAAL 99
>01_07_0169 + 41650339-41651217
Length = 292
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 77 YRRRPTELQGRMARTYRNTADGATHAIFGAPARLG 181
+R PTE TY N D HAI+ A + G
Sbjct: 179 FRVSPTERDQNNGLTYTNLFDAMMHAIYAALEKAG 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,076,999
Number of Sequences: 37544
Number of extensions: 273071
Number of successful extensions: 667
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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