Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301G02f
(472 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49208| Best HMM Match : G_glu_transpept (HMM E-Value=0) 103 1e-22
SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 1e-18
SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0) 86 2e-17
SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0) 61 4e-10
SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0) 47 7e-06
SB_43975| Best HMM Match : G_glu_transpept (HMM E-Value=5.3e-16) 38 0.006
SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11) 28 4.5
SB_21007| Best HMM Match : Insulin (HMM E-Value=1.6) 27 5.9
SB_51164| Best HMM Match : SOCS_box (HMM E-Value=8e-10) 27 5.9
>SB_49208| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 596
Score = 103 bits (246), Expect = 1e-22
Identities = 52/121 (42%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Frame = +3
Query: 6 PEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSGS 185
PE+ + G L +V ++Q GG+IT +D+RNY+V+ ++P+ P E + +++ P PGSG+
Sbjct: 251 PESFYTGDLARDIVNELQEEGGLITLEDMRNYKVKVRKPLKFPFGE-YNVFTTPPPGSGT 309
Query: 186 VLAFILNMLRGW--IGVDTVAPVGSDLYWHRIVETFKYAYAKRTGLGDPSRHNLNQSILE 359
VL ILN+L+G+ G D S L +HRIVE FK+AYA R LGDP ++ Q+I
Sbjct: 310 VLNLILNILKGFKMTGEDRKDDASSILTYHRIVEAFKFAYANRALLGDPEYSDIYQAIST 369
Query: 360 L 362
L
Sbjct: 370 L 370
>SB_27634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 89.8 bits (213), Expect = 1e-18
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Frame = +3
Query: 6 PEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSGS 185
P + ++G L +V+D++ GGIIT DL Y +W++ +A + + + +Y+ P P SG+
Sbjct: 288 PHSFYNGCLANDIVRDVKKAGGIITLKDLAAYSPKWKKALASDVGDLN-MYTTPPPSSGA 346
Query: 186 VLAFILNMLRGW--IGVDTVAPVGSDLYWHRIVETFKYAYAKRTGLGDP 326
V+ ILN+LRG+ D + S L +HRI+E+FKYAYA R LGDP
Sbjct: 347 VITMILNILRGYNMTAADRSSDAQSALTYHRIIESFKYAYAWRAKLGDP 395
>SB_57495| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 761
Score = 85.8 bits (203), Expect = 2e-17
Identities = 46/122 (37%), Positives = 78/122 (63%), Gaps = 3/122 (2%)
Frame = +3
Query: 6 PEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQE-PIAIPLTEQHTLYSVPLPGSG 182
P ++GSL A + +DIQ+ GGI+T +DL+NY + + PI L + T+++ P G
Sbjct: 253 PNDFYEGSLAADIAKDIQDGGGIVTAEDLKNYTAQTNKVPIKNTLGGR-TMFATTGPSGG 311
Query: 183 SVLAFILNMLRGW-IGVDTVAP-VGSDLYWHRIVETFKYAYAKRTGLGDPSRHNLNQSIL 356
V+ I+N+++G+ +G + A S L +HRIVE+FK+A+A+R LGDP+ N+ + +
Sbjct: 312 PVVTLIMNIMKGYNLGPEARASDSASGLTYHRIVESFKFAFARRALLGDPAFENITEIMS 371
Query: 357 EL 362
+L
Sbjct: 372 KL 373
>SB_12036| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 646
Score = 61.3 bits (142), Expect = 4e-10
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Frame = +3
Query: 3 GPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQH--TLYSVPLP- 173
G + ++G ++ +V+DI GGI T DDL+ Y +P+ L + + + P P
Sbjct: 291 GADIFYNGKMSKTVVKDINGEGGIFTLDDLKEYIAGDAKPVIAYLGHMNGAKIITPPPPA 350
Query: 174 GSGSVLAFILNMLRGWIGVDTVAPVGSDLYWHRIVETFKYAYAKRTGLGDP 326
G G+V++ L +L G+ + L +HR++E FK+A+A T LGDP
Sbjct: 351 GGGAVMSEALQILSGYNFKPSDLKDHPGLTYHRMIEAFKFAHASLTYLGDP 401
>SB_14030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 54.8 bits (126), Expect = 3e-08
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 21/129 (16%)
Frame = +3
Query: 6 PEAIHDGSLTARLVQDIQNFG--GIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGS 179
P + ++G+L +++DIQ GI+ DDL+NY E ++ ++ L +++VP P S
Sbjct: 400 PHSFYNGTLARNIIRDIQFMEPQGIMGLDDLKNYTAEIRKGLSGRLGPNLVMHTVPPPAS 459
Query: 180 GSVLAFILNMLRGW-IGVDTVAPV------------------GSDLYWHRIVETFKYAYA 302
G+V+ +L++L+G G T V S L +HRI E K+A+A
Sbjct: 460 GAVMHLLLDILKGLESGFKTCVDVRGKGYNFTESSRDLKDTNTSTLTYHRITEASKFAFA 519
Query: 303 KRTGLGDPS 329
R+ L DP+
Sbjct: 520 WRSRLADPA 528
>SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0)
Length = 566
Score = 47.2 bits (107), Expect = 7e-06
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 123 IAIPLTEQHTLYSVPLPGSGSVLAFILNMLRGWIGVDTVAPVGSDLYWHRIVETFKYAYA 302
++I ++ + + ++PLPGSG VL LN+L + + G + + IVE K+AYA
Sbjct: 375 LSIRPSQGYQITTIPLPGSGPVLFSALNILEQF--QFSKVDKGKNETYQYIVEALKFAYA 432
Query: 303 KRTGLGDPS 329
+RT LGDP+
Sbjct: 433 QRTHLGDPA 441
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 3 GPEAIHDGSLTARLVQDIQNFG-GIITEDDLRNYR 104
GP+A + G + +V+ +Q G+IT DDL+NY+
Sbjct: 141 GPDAFYTGDIAQSIVKTVQGSNDGVITLDDLKNYK 175
>SB_43975| Best HMM Match : G_glu_transpept (HMM E-Value=5.3e-16)
Length = 300
Score = 37.5 bits (83), Expect = 0.006
Identities = 25/100 (25%), Positives = 44/100 (44%)
Frame = +3
Query: 3 GPEAIHDGSLTARLVQDIQNFGGIITEDDLRNYRVEWQEPIAIPLTEQHTLYSVPLPGSG 182
G + G + +V I GG++T +DL ++ + EPI ++ +P G G
Sbjct: 143 GKAGFYQGPVAKAIVNVIHEHGGVMTLEDLAAHQSTFDEPIK-TCYRGINVWEIPPNGQG 201
Query: 183 SVLAFILNMLRGWIGVDTVAPVGSDLYWHRIVETFKYAYA 302
LN+L G+ + + S Y H + E K ++A
Sbjct: 202 ITALIALNILEGF-NLKELGH-NSPEYLHLVAEALKLSFA 239
>SB_40746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 31.9 bits (69), Expect = 0.28
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = -1
Query: 445 VSNHCMCGCRPRALYTXAAHSAFARFCSNSRI---LWLRL*REGSPRPVRFAYAYLKVST 275
+S H G PR Y+ + AF + ++SR+ LW+ L G +P R K T
Sbjct: 77 LSRHAGQGTNPRKCYSSSTIKAFRKSSTSSRLSDDLWMELKDLGILKPYRSRRKRRKQRT 136
Query: 274 MRCQYRSEPTGATVSTPIHPRSMFSI 197
C S+ A + PR S+
Sbjct: 137 RPCVNESDANEARTVSVNPPRIKASL 162
>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
Length = 881
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -2
Query: 72 YRRSSVCLVRVAPLVSRRES 13
+RR SV + RV+PL+SR+ES
Sbjct: 762 FRRRSVQIQRVSPLLSRKES 781
>SB_21007| Best HMM Match : Insulin (HMM E-Value=1.6)
Length = 106
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 466 LGTQLHS--VSNHCMCGCRPRALYTXAAHSAFARFCSNSRIL 347
LG L S +S H CG R YT A+H+ A + I+
Sbjct: 12 LGLTLASCLLSTHAQCGSRGCRKYTEASHAPIAGYLCGDHIM 53
>SB_51164| Best HMM Match : SOCS_box (HMM E-Value=8e-10)
Length = 322
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -1
Query: 244 GATVSTPIHPRSMFSINASTEPEPGRGTEYSVCCSVSGIA 125
GA V IHPR EP+ T VCCSV ++
Sbjct: 46 GAPVDAKIHPRQRLY-----EPDYATTTALQVCCSVGDVS 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,447
Number of Sequences: 59808
Number of extensions: 302394
Number of successful extensions: 725
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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