Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301G01f
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 36 0.002
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.15
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.20
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 29 0.35
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 28 0.62
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 27 1.9
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 26 3.3
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 25 4.4
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 25 4.4
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 4.4
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 25 5.8
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 5.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.6
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.6
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 36.3 bits (80), Expect = 0.002
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 455 KNSLTL-EKCLRKELVEQGILDPEDLPPLTNPADDEILAEIKKCQTELTAVRKENCRNLK 279
++SL++ E LR L + GIL D+ + DDEI A ++ L V EN +
Sbjct: 384 ESSLSICEDRLRYTLKQLGILYDGDVD-WSKRQDDEISATLRSLNARLKVVSDENEKMRN 442
Query: 278 NLIGLCKQEMIRLNLKKQLDQVDLECIDIY-KKMVAAK-QKKRPVTKK 141
L+ + +EM + +D +D + Y K+ + K +KKR VT K
Sbjct: 443 ALLQMLPEEMAFQEFQNVMDDLDKQIEQAYVKRNRSLKVKKKRIVTDK 490
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.15
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -2
Query: 332 KCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKR- 156
K Q ++ ++KE +L G K E NL+K+LD+ YK +V + +KR
Sbjct: 118 KTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDK--------YKDLVETEAEKRA 169
Query: 155 PVTKKEKEDAWKAINEQIRLNKEI 84
+TK+E E +W EQ +L K++
Sbjct: 170 AITKEECEKSWL---EQQKLYKDM 190
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.20
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = -2
Query: 266 LCKQEMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKRPVTKKEKEDAWKAINEQIRLNKE 87
L +QE I K+L++++ E I + ++ ++++R +EKE+A + EQI LNKE
Sbjct: 113 LREQEKIAAKKMKELEKLEKERIRLQEQQ--RRKEERDQKLREKEEAQRLRQEQI-LNKE 169
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.35
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = -2
Query: 377 PLTNPADDEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQLDQ-VDLEC 201
P + +DDE+ + + E + + N + K L K+EM+ NL + DQ VDLE
Sbjct: 256 PRASGSDDELDYDEEFADDEEAPIMEGNEEDNKKLKDKIKKEMLTANLFGEADQDVDLEE 315
Query: 200 IDIYKKMVAAKQKKRPVTKKEKEDAWKAINE 108
+ + K+ +R + EK A+++ E
Sbjct: 316 ENDRQMSREGKKLQRYLKLLEKNLAYESDEE 346
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 28.3 bits (60), Expect = 0.62
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = -2
Query: 356 DEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQLDQVDLECIDIYKKMV 177
D+ L+E +KC+TE + + N +GL +++ L + +CID + +
Sbjct: 474 DQWLSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVF 533
Query: 176 AAKQKKRPVTKK 141
A + P ++K
Sbjct: 534 AFSLRVYPKSEK 545
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/62 (17%), Positives = 29/62 (46%)
Frame = -2
Query: 236 LKKQLDQVDLECIDIYKKMVAAKQKKRPVTKKEKEDAWKAINEQIRLNKEINALPQTGPN 57
L+++++ L + + + + + PVT ++ AW +E + N ++++
Sbjct: 251 LRRRIESARLRSNQLNEPVEQPRVVQTPVTNASEQQAWNDFDEILHANSSVHSVATEATI 310
Query: 56 SN 51
SN
Sbjct: 311 SN 312
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 3.3
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 398 LDPEDLPPLTNPADDEILAE-IKKCQTELTAVRKEN 294
+D +DL AD+E+L E I+KC EL+ R EN
Sbjct: 1 MDVDDLIYACRAADEELLDEIIEKCPQELSR-RDEN 35
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 254 EMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKRPVTKK 141
+M+ ++L KQ++Q+ C+ +Y K+ A + V K+
Sbjct: 98 KMVFMSLAKQIEQMLKFCMMVYSKLCEAFETTLKVAKE 135
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = -2
Query: 260 KQEMIRLNLKKQLDQVDLECIDIYKKMVAAKQKKRP 153
++++I ++++ +Q + EC+DI KMV + K+P
Sbjct: 160 EKDVITISVENGKEQSEEECLDIVHKMV--NENKQP 193
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 197 QYILDPLDPVAFSD 238
QY+L PLDP+A S+
Sbjct: 504 QYVLTPLDPIAASE 517
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -2
Query: 167 QKKRPVTKKEKEDAWKAINEQIRLNKEIN 81
++KR ++ ++ + WK I+ Q+ L+ +IN
Sbjct: 248 EEKRILSTQDLQSGWKFIDNQMFLSTQIN 276
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = -2
Query: 221 DQVDLECIDIYKKMVAAKQKKRPVTKKEKEDAWKAINEQIRLNKEINALPQTGPNS 54
+ VD E + K+ + KQK++ +++ +D K +NE++ LN + LP N+
Sbjct: 506 NDVDDESVIGEKEKLILKQKQKCLSEFFVDDIKKLLNEEL-LNCQKQELPDVMENT 560
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 191 YKKMVAAKQKKRPVTKKEKEDAWKAINEQIRLNKEI 84
Y+K + R +K +ED KA+ + LNKEI
Sbjct: 1062 YEKELLRHADARSTLQKLREDYTKALEQVEDLNKEI 1097
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 7.6
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Frame = -2
Query: 356 DEILAEIKKCQTELTAVRKENCRNLKNL--IGLCKQEMI--RLNLKKQLDQVDLECIDIY 189
DE + ++ +R+EN +N+K L K ++ R ++ +LD +
Sbjct: 393 DECRRNLLWAESSCETIREENQKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLK 452
Query: 188 KKMVAAKQKKRPVTKKEKEDAWKAINEQIRLNKEINALPQTGPNSN 51
++ + KQ + K A +Q+++ + +N L +N
Sbjct: 453 DEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKLTSLQEQNN 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,972
Number of Sequences: 5004
Number of extensions: 29256
Number of successful extensions: 114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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