Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G01f
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 230 KQLDQVDLECIDIYKKMVAAKQKKRPVTKK 141
           K L  +  E ID Y+    +K+K  P T K
Sbjct: 251 KMLTPIKSEPIDAYEMHQISKKKLSPATPK 280


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 424 GRNWLNKEYLIQRIYHLSLIQ 362
           G+ W N   LI   +HL++++
Sbjct: 131 GQKWRNHRKLIAPTFHLNVLK 151


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -2

Query: 368 NPADDEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLKKQL 222
           NP    +  ++      L      N   L   +GL   ++I +NLK Q+
Sbjct: 31  NPDTKRLYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQV 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,916
Number of Sequences: 438
Number of extensions: 2163
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)