Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301F11f
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 180 4e-46
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 174 2e-44
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 31 0.53
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 2.1
03_06_0610 + 35052455-35053429,35054936-35055511 28 2.8
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 3.7
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 4.9
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 4.9
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 4.9
07_03_0593 + 19808148-19808310,19809416-19809531,19810129-198102... 27 8.6
06_03_1332 - 29403320-29407804 27 8.6
02_05_0880 + 32466538-32467083,32467333-32467644,32467731-324682... 27 8.6
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 27 8.6
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 180 bits (438), Expect = 4e-46
Identities = 85/110 (77%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
Frame = +1
Query: 103 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 279
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 280 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIXSGPRED 429
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AII SGPRED
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPRED 119
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 174 bits (424), Expect = 2e-44
Identities = 82/109 (75%), Positives = 94/109 (86%), Gaps = 1/109 (0%)
Frame = +1
Query: 106 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 282
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 283 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIXSGPRED 429
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AII SGPRED
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPRED 120
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 30.7 bits (66), Expect = 0.53
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +1
Query: 46 EAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 225
+AGS+ V S + D+ E+K G + S S+ D +V E P S+ R
Sbjct: 578 DAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILD--TVFEDSNSNEPESSRRT 635
Query: 226 AHKRFRKAQCPIVERLTNSLMMHGRNNGKKLM 321
+ +CP ++ + S N+G L+
Sbjct: 636 SCTERVALRCPAIDSVARSFSWEDTNSGSPLL 667
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 38 T*PRQAAWLWKPCLYHKPPTF 100
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -3
Query: 156 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWY 4
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWH 470
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 37 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 207
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 262 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 372
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 4.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 192 VLLFNGNVVLQRHIRDLHIVATPSAEK 112
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -2
Query: 325 RPSVFCHCSDRASLESL*GAPRLGTGLYGNACVHTCQLNEVNIL 194
RP+VF + R++ E+ + RLG G YG V+ +LN+ ++
Sbjct: 579 RPNVFSYSELRSATENFSSSNRLGEGGYG--AVYKGKLNDGRVV 620
>07_03_0593 +
19808148-19808310,19809416-19809531,19810129-19810202,
19810286-19810335,19810498-19810592
Length = 165
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 160 LQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERL 273
LQD+ V E YAKY P A A ++ A P+ R+
Sbjct: 122 LQDFKKVNEIYAKYFPAPAP--ARSTYQVAALPLNARI 157
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 110 SFSADGVATMCKSLICLCRTTFPLKRSTQNIYLIQLAGMHT 232
+FS G T S + FP S Q +YL + GM T
Sbjct: 1268 AFSIWGCPTFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMET 1308
>02_05_0880 +
32466538-32467083,32467333-32467644,32467731-32468201,
32468481-32469246,32469332-32469774
Length = 845
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +3
Query: 267 APYKLSNDARSEQWQKTDGRTYCQTCV 347
AP+ + + W T R +C+ CV
Sbjct: 178 APHGMKEELDKADWSSTHNRIFCELCV 204
>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 175 SVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLM 288
S+K++Y + L G + CP+ R NS++
Sbjct: 1445 SLKQRYVRRLGFETGHIVDPDLGELLCPVCRRFANSIL 1482
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,054,277
Number of Sequences: 37544
Number of extensions: 245169
Number of successful extensions: 591
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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