Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F11f
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               206   8e-54
SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)                 28   2.8  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     27   6.6  
SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)        27   8.7  
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  206 bits (502), Expect = 8e-54
 Identities = 95/124 (76%), Positives = 109/124 (87%)
 Frame = +1

Query: 58  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKR 237
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL DYI+VKEKY+ YLPH+AGRYA KR
Sbjct: 69  VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISLTDYIAVKEKYSTYLPHTAGRYAAKR 128

Query: 238 FRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIIXSG 417
           FRKAQCPIVER+TNS+MMHGRNNGKKLM VRI+KH+FEIIHLLTGENPLQVLV AII SG
Sbjct: 129 FRKAQCPIVERITNSMMMHGRNNGKKLMTVRIIKHSFEIIHLLTGENPLQVLVNAIINSG 188

Query: 418 PRED 429
           PRED
Sbjct: 189 PRED 192



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +1

Query: 58  VVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSL 162
           VV +  +   A ++P+IKLFG+WS  DVQVSD+SL
Sbjct: 6   VVDDDAAAVVAPEVPDIKLFGKWSTEDVQVSDISL 40


>SB_18806| Best HMM Match : RVT_1 (HMM E-Value=1.7e-14)
          Length = 556

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  IPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 228
           IPE  L     C DV   +  LQ+++ + +KY  YL + A +Y+
Sbjct: 511 IPEEAL--NLECPDVDFRESVLQEFLLLDKKYESYLEYLALKYS 552


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 121 RWSCYDVQVSDMSLQDYISVKEKYAKYLP 207
           RWSC   Q  + +++ Y+  KE  ++ LP
Sbjct: 59  RWSCVTYQAKNQAVECYLPGKEPGSRVLP 87


>SB_41149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 7   PIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKL--FGRWSCYDVQVSDMSLQ 165
           P   E+ WNDD  E   V+   +SLP+   + E+ L  +  +S  +VQ+     Q
Sbjct: 210 PHFVEKEWNDDTYE---VMRGMISLPEVIAVGEVGLDFYRNYSKKEVQIEAFEKQ 261


>SB_37930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 201 IFCVLLFNGNVVLQRHIRDLH 139
           IFC  LF+G  +L+RH+   H
Sbjct: 405 IFCRKLFHGKSLLERHVSKRH 425


>SB_2940| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.4e-22)
          Length = 416

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 4   VPIMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVK 183
           +PI+  E  NDDVA  GS +          D P IK    +  Y +  +  +  +Y   K
Sbjct: 281 LPIVLGEGINDDVAIPGSYI-------NIKDFPNIKALSEYIKY-LDKNHTAYNEYFQWK 332

Query: 184 EKY 192
            KY
Sbjct: 333 RKY 335


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
 Frame = +1

Query: 10  IMAEENWNDDVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKE- 186
           +  E+ W+  ++  G +   T   P    +   +L   WS     V D ++ ++I     
Sbjct: 624 VRIEDEWSSQISPRGGIPQGTRLAPLLFAVLVNRLADEWSTRLKYVDDATVLEFIPRNSP 683

Query: 187 KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKL 318
            Y   +     RYA +R  +      + +    + +G     KL
Sbjct: 684 SYLPIVASGISRYATQRNMRLNPNKCKEMVIDFLHYGEQQKHKL 727


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,129,109
Number of Sequences: 59808
Number of extensions: 290312
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)