Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F10f
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)                   29   2.3  
SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26)          27   9.2  

>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
          Length = 454

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 433 DMDSLDVSFIQKTRFHFDILRNGLMYRLIIE 341
           D  +L ++   KTR H ++L  G+MYRL+ E
Sbjct: 348 DDSALMLTLQGKTREHLEMLNTGIMYRLLEE 378


>SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26)
          Length = 692

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 326 HFYDILNNQP----VHQPISQNIKVKSCFLYERY 415
           HFYDILN  P     ++   +N+  +   LYE+Y
Sbjct: 475 HFYDILNQYPNEKVYNEKWKENLSKRDQELYEKY 508


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,079,473
Number of Sequences: 59808
Number of extensions: 223914
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)