Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F08f
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27)                 27   8.2  

>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 150  SQKRSVNNVRNFHVVLIIFVKMGKSTLDLISLNVCLHYMKNKSPILKKKK 1
            S++ +  +V ++ + +++  K  K TLD   +N+ +    +  PI  KKK
Sbjct: 1271 SKRLNRESVASYELNVVVQDKRTKRTLDRTKVNITVDDSNDNRPIFLKKK 1320


>SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27)
          Length = 399

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -3

Query: 198 VSIIKGKLIKMF*WFISQKRSVNNVRNFHVVLIIFVKMGKSTLDLISLNVCLH 40
           V I+  +L K+  WF++ K S+NN       +I   K  + TL +I +++  H
Sbjct: 232 VVIVNEELGKLTDWFLANKLSINN------FMIFRPKQKRQTLHVIKVSIGCH 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,763
Number of Sequences: 59808
Number of extensions: 185502
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)