Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F08f
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm rece...    27   5.5  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AC024882-2|AAF60935.2|  344|Caenorhabditis elegans Seven tm
           receptor protein 156 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 461 LSFNFLNGICCSECPLYFICIN 396
           L FNF++G+ C    LY I IN
Sbjct: 91  LMFNFVSGVACFGSSLYAIAIN 112


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 457 VLIF*MESVVPNA-LCTLFALMKTCKLVLNVCLVLIRQLWLWSLDYV 320
           +++   ++++P+  LC L  L   C +++ + ++LIR  + W +  V
Sbjct: 175 IIVSPAKTIIPSVTLCVLNLLQNICIMMVALSILLIRNTYNWCIPTV 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,009,978
Number of Sequences: 27780
Number of extensions: 161483
Number of successful extensions: 278
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)