Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301F07f
(323 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1029 + 22419046-22419331,22419430-22419461 34 0.029
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 0.36
08_02_0009 + 11216532-11218687,11220727-11225998 28 1.9
08_02_0003 + 11180421-11180757,11180773-11185715 28 1.9
08_02_0002 + 11173365-11173512,11173528-11178470 28 1.9
10_02_0074 - 4965688-4966638,4966877-4966906,4968656-4968927,496... 27 2.6
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 27 4.5
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 26 7.8
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 26 7.8
07_03_1589 + 27948546-27948548,27948890-27948958,27949235-279493... 26 7.8
>10_08_1029 + 22419046-22419331,22419430-22419461
Length = 105
Score = 33.9 bits (74), Expect = 0.029
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 140 DVVCDFEANAQFKRDRAVDSEILSILRQRYEDCMMYEQPDHATKCRSLWDKYKSA 304
D V E R++ + E I+R R C E +H KCR L D+Y A
Sbjct: 25 DPVAMLEYREHLVREKWIQIETAKIIRDRLRWCYRIEGVNHHQKCRHLVDQYLEA 79
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 30.3 bits (65), Expect = 0.36
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 26 DAPVTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEI 205
D P T +QK+Y ++ RV ID ++ +VCD E ++++
Sbjct: 550 DKPRNHLSRTCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDE 609
Query: 206 LSILRQRYE 232
+ + + YE
Sbjct: 610 VETINEEYE 618
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 53 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 232
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 1524 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 1583
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 53 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 232
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 808 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 867
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 53 TVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRDRAVDSEILSILRQRYE 232
T +QK+Y ++ RV ID ++ +VCD E ++++ + + + YE
Sbjct: 745 TCPNKDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYE 804
>10_02_0074 -
4965688-4966638,4966877-4966906,4968656-4968927,
4969092-4969329
Length = 496
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 29 APVTWFRETVVEPNQKKYP--WYHQ 97
APV W + + +P++ +YP WY+Q
Sbjct: 269 APVPWCADCMAQPDRIEYPAVWYNQ 293
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 227 YEDCMMYEQPDHATKCRSLWDKYKSAE 307
Y D M QP ATK R+ WD+ + E
Sbjct: 232 YADAMRDNQPAPATKRRNRWDQSQEDE 258
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 140 DVVCDFEANAQFKRDRAV--DSEILSILRQRY 229
++V ANAQF V +SE L ILRQRY
Sbjct: 333 ELVPSGRANAQFPGSHPVSLNSENLQILRQRY 364
>10_07_0091 -
12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = -3
Query: 303 ADLYLSQRDLHLVAWSGCSYIMQSS*RCLRMLNISESTALSRLN*ALASKSQ 148
+DL++ + L+ GC + Q+S C R+ ++ S ++ +L+ ++
Sbjct: 557 SDLHIEAPKMSLLELKGCGVLSQASINCPRLTSLDASFCRKLMDDSLSQTAE 608
>07_03_1589 +
27948546-27948548,27948890-27948958,27949235-27949335,
27949460-27950173,27951172-27951333,27951669-27952458
Length = 612
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 63 STTVSRNHVTGASTVL 16
STT+ RNHV A TVL
Sbjct: 321 STTIKRNHVEEADTVL 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,765,099
Number of Sequences: 37544
Number of extensions: 127875
Number of successful extensions: 387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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