Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F05f
         (384 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    24   0.60 
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   3.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   3.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   7.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   9.7  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 225 EYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMY 332
           +Y  Q+W  GS+  VR+     + +IL+ NY  L +
Sbjct: 440 KYIIQIWTTGSDPQVRNLLDNGYRVILS-NYDALYF 474



 Score = 19.8 bits (39), Expect = 9.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 125 RVVISNYDVI 96
           RV++SNYD +
Sbjct: 463 RVILSNYDAL 472


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 173 ELTLVIGVD*FASFNSRVVISN 108
           EL   IGV  F SF+  V +SN
Sbjct: 44  ELIKQIGVKEFDSFHDHVSVSN 65


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 223 WSTPTSSGCKAPRTSSGIVS 282
           W TPTSS         G++S
Sbjct: 7   WDTPTSSAPAFSEQRGGVIS 26


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -1

Query: 234 RRTPCSSSCCFVSDC 190
           R  PC  + C + DC
Sbjct: 159 RAPPCDPAVCVLPDC 173


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 260 GHRPGLFPG*VHTYLS*KL 316
           GH  GL+P  V T  + KL
Sbjct: 218 GHHSGLYPSAVDTTTNQKL 236


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 223 WSTPTSSGCKAPRTSSGIVSR 285
           +S+P SSG   P + +G + R
Sbjct: 135 YSSPMSSGSYDPYSPNGKIGR 155


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,528
Number of Sequences: 336
Number of extensions: 1385
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)