Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F05f
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   0.58 
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    27   1.3  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   1.8  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   4.1  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   5.4  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   9.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   9.4  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    24   9.4  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 0.58
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 148 STPITRVSSSQMS*TI*YETTR*TAWSTPTSSGCKAPRTSSGIVSRLSSHLS 303
           ST  +  SSS  S T+   ++  ++  T +SS    P +SS   S LSSH S
Sbjct: 357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKS 408


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +3

Query: 78  LAEHLYNDVIIADYDSAVERSK----LIYTDNKGELITNVVNNLIRNNKMNCMEYAYQLW 245
           LAE   +  +  D +S  E  K    LI    K  L ++    +++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = +3

Query: 276 CFPVEFTLILAEN---YVKLMYRARRSRFYIERQW 371
           CFP +  ++++E+   Y++ + R RRS + +ER +
Sbjct: 534 CFPNQSPVLISESVSSYIQGVLRQRRSEYRVERDF 568


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 24  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSK 143
           C  A   YAD      +  +E L +D+ I D+D+  E  K
Sbjct: 533 CTIAGVAYADVIPEDRQFTSEDLDSDMYIYDFDTLKENLK 572


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 215 ELHGVRLPALDARLRGHRPGLFPG*VH 295
           ++H      L+ARL GH+ G++   +H
Sbjct: 374 QIHNAITGVLEARLEGHKEGVWAVKIH 400


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 148 STPITRVSSSQMS*TI*YETTR*TAWSTPTS 240
           STP+T  SSS  S T  Y T   T  ST T+
Sbjct: 254 STPVTVSSSSLSSFTPSYSTNLTTTGSTTTT 284


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 226 STPTSSGCKAPRTSSGIVSRLSSHLS 303
           STP S+    P + S   SRLSS L+
Sbjct: 730 STPLSNSSAYPSSGSSTFSRLSSTLT 755


>SPAC56F8.04c
          |coq2|ppt1|para-hydroxybenzoate--
          polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 358

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 46 TPTKAQPSTKSWRSIF 93
          TP    PS KSW+ +F
Sbjct: 44 TPNLISPSKKSWKDLF 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,530
Number of Sequences: 5004
Number of extensions: 24175
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)