Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F05f
         (384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     28   2.2  
06_01_0698 + 5093656-5093899,5094736-5094908                           27   3.8  
10_08_0993 + 22087050-22087118,22087361-22087430,22087922-220879...    27   5.1  
10_07_0098 - 12844631-12845074,12845329-12846570                       27   5.1  
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    27   5.1  
06_03_0001 - 15276668-15276853                                         27   6.7  

>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 285  PGNNPGRCPRSLASRAGRRTPCSSSCCFVSDCLRHL**AHPCYRCRLVC 139
            P  NP + PRS    +   T  S +     D + HL    PC++C ++C
Sbjct: 1132 PPANP-KSPRSKDVASDEMTDPSPNVSVKYDVISHLKKYQPCFQCMMLC 1179


>06_01_0698 + 5093656-5093899,5094736-5094908
          Length = 138

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 282 GNNPGRCPRSLASRAGRRTPCSSSCCFVSD 193
           G++P     +  +R+G R+PC++ C  V D
Sbjct: 12  GDDPATAATAPPTRSGHRSPCAARCGKVGD 41


>10_08_0993 +
           22087050-22087118,22087361-22087430,22087922-22087999,
           22088180-22088251,22090258-22090311,22090651-22090817
          Length = 169

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -1

Query: 258 RSLASRAGRRTP---CSSSCCFVSD 193
           RSL++RAG RTP   CS   C   D
Sbjct: 103 RSLSARAGNRTPGSRCSKVACLARD 127


>10_07_0098 - 12844631-12845074,12845329-12846570
          Length = 561

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +3

Query: 144 LIYTDNKGELITNVVNN----LIRNNKMNCMEYAYQLW 245
           ++YT+N+G ++T V  +      + NK+NC+ + ++ W
Sbjct: 275 MVYTENEGVMMTGVYASKEEAKKKGNKINCVGWWFKPW 312


>08_01_0033 +
           244930-245105,245297-245344,245835-246539,246652-246796,
           246893-247240,247882-248721,248786-248832,249470-249596,
           249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 367 CRSM*KRDRLALYISLT*FSAKISVNSTGKQSRTMSSE-PCIQSW*AYSMQFILLFRIRL 191
           CR    R RL   +++  +S+ + + +T K   T+  + PC Q W     +++L   I+L
Sbjct: 762 CRIRFCRIRLGSKVAMFRYSS-VEIYTTCKPQTTLQFDNPCRQDWFKEERRYVLARGIKL 820

Query: 190 FT 185
           F+
Sbjct: 821 FS 822


>06_03_0001 - 15276668-15276853
          Length = 61

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 285 PGNNPGRCPRSLASRAGRRTP 223
           P   PGRCP SL S + R  P
Sbjct: 4   PYAEPGRCPASLPSSSSRTEP 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,395,498
Number of Sequences: 37544
Number of extensions: 164745
Number of successful extensions: 471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)