Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F05f
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-5|AAK84599.2|  568|Caenorhabditis elegans Hypothetical ...    28   2.0  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    28   2.6  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   3.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   3.4  
U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z83129-9|CAB63325.2|  100|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>AC006729-5|AAK84599.2|  568|Caenorhabditis elegans Hypothetical
           protein Y24D9A.2 protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +3

Query: 198 IRNNKMNCMEYAYQLWMQGSEDIVRDCFPVEFTLILAENYVKLMYRARRSRFYIERQWRG 377
           ++N +++  +YAYQ+         R    V+F+    + Y KL+ +  R RF+I+ +  G
Sbjct: 398 LKNMELDNRDYAYQITYSDDVKFRRLLQEVKFS----KEYTKLLEKLSRKRFFIDPKIHG 453


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 LITNVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCF 281
           L+  V++ L  N K+ C ++  QL       IVR+C+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 LITNVVNNLIRNNKMNCMEYAYQLWMQGSEDIVRDCF 281
           L+  V++ L  N K+ C ++  QL       IVR+C+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCY 293


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +3

Query: 3    KSAVVVLCLFAASLYADEGT-AFNEILAEHLY--NDVIIADYDSAVERSKLIYTDN-KGE 170
            K+ VV LC+ A +LY    T    E + E LY  + V  A    + +R +++  +  + E
Sbjct: 925  KNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEIEPE 984

Query: 171  LITNVVNNLIRNNKMNCMEYAY 236
               N++N  +      C+E AY
Sbjct: 985  TYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +3

Query: 3    KSAVVVLCLFAASLYADEGT-AFNEILAEHLY--NDVIIADYDSAVERSKLIYTDN-KGE 170
            K+ VV LC+ A +LY    T    E + E LY  + V  A    + +R +++  +  + E
Sbjct: 925  KNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEIEPE 984

Query: 171  LITNVVNNLIRNNKMNCMEYAY 236
               N++N  +      C+E AY
Sbjct: 985  TYHNILN--VMPEGQACLEKAY 1004


>U42838-2|AAB52493.1|  417|Caenorhabditis elegans Hypothetical
           protein T08G2.3 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 24  CLFAASLYADEGTAFNEILAEHLYNDVIIADYDSAVERSKLI 149
           CL  ++ YA E  AF  ++A H     ++AD    +E ++LI
Sbjct: 285 CLDESAKYALERKAFGTVIANHQAVQFMLADMAVNLELARLI 326


>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 264 CPRSLASRAGRRTPCSSSCC 205
           C  + ASR  R +PC S CC
Sbjct: 76  CSCTSASRCSRCSPCCSGCC 95


>Z83129-9|CAB63325.2|  100|Caenorhabditis elegans Hypothetical
           protein W06G6.9 protein.
          Length = 100

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 258 RSLASRAGRRTPCSSSCCFVSDCLRHL**AHPCYRCRLVCF 136
           R   + +G++ P +  CC  +DC R       C    L CF
Sbjct: 54  REQPTGSGQQNPANGGCCCDNDCCRCFNEVCRCVGSILFCF 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,897,794
Number of Sequences: 27780
Number of extensions: 146845
Number of successful extensions: 429
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)