Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F04f
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   0.67 
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    27   0.88 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   4.7  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    24   6.2  
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    24   6.2  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    24   8.2  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   8.2  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -3

Query: 204 VGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHEKNCNE 43
           VG   W ++         A+++  V +VSA  ++G  G  V +   N E N  +
Sbjct: 636 VGISLWTNLSMFKHVSTKALRLDDVVEVSAPSVSGEKGISVVEAALNVESNAED 689


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 105 NGFTGFRVAQNRGNHEKNCNESLHFSLY 22
           N +   R+  NR N   NC   L FSLY
Sbjct: 32  NVYFSLRILLNRQNEGNNCKYKLVFSLY 59


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 219 WAG*SVGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHE 58
           W G S+GA S  +    +   P  ++ +IVT    A+  G        N G H+
Sbjct: 119 WTGLSIGALSVLAPGFQSEVAPADLRGTIVTTYQLAVTGGIF-IAACINMGTHK 171


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -3

Query: 219 WAG*SVGAESWASMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHE 58
           W G ++GA S  +    +   P  ++ +IVT    A+  G        N G H+
Sbjct: 119 WTGLAIGALSVLAPGFQSEVAPATLRGTIVTTYQLAVTGGIF-IAACINMGTHK 171


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 207 SVGAES---WASMDSDARAQPVAVKIS 136
           ++G ES   WAS+DSD   Q ++ K++
Sbjct: 4   TLGQESKTDWASLDSDEEVQRISDKVN 30


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +2

Query: 41  LSLQFFSWLPRFWATLNPVKPFRSAADTWVTMLIFTAT 154
           +SL F SW P +   +        A D W    +  AT
Sbjct: 43  ISLYFMSWHPNYCTIVYLYSSLLDAFDGWAARKLHQAT 80


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 104 FRSAADTWVTMLIFTATG 157
           +RS   TW+ +L+F+A G
Sbjct: 186 YRSLPGTWIFVLVFSAFG 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 953,552
Number of Sequences: 5004
Number of extensions: 14612
Number of successful extensions: 37
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)