Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F04f
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834...    28   1.9  
03_01_0377 + 2940333-2940418,2940512-2940658,2940741-2940809,294...    28   2.5  
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    27   5.9  
09_06_0264 - 21929086-21931368                                         27   5.9  
08_02_0459 + 17420156-17420976,17422291-17424199                       27   5.9  
03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405     26   7.7  
01_05_0288 - 20477147-20477635,20477995-20478067,20478807-20478892     26   7.7  

>03_05_0222 +
           22082863-22082938,22083261-22083333,22083451-22083496,
           22083639-22083753,22083847-22083926,22084022-22084621,
           22084718-22084822,22084916-22085248
          Length = 475

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 160 STRGRKDQHSDPGVRCASEWFYWVQGRPEPRQPRKE 53
           ST G  DQ +   +R A      V+G+PEP +P+K+
Sbjct: 415 STGGTVDQKTIDSIRQAIGQNIQVKGQPEPSEPQKK 450


>03_01_0377 +
           2940333-2940418,2940512-2940658,2940741-2940809,
           2940958-2941123,2941208-2941436,2941528-2942054
          Length = 407

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 61  VVASVLGDPEPSKTIQKRSGHLGHYADLYGHGLSSGIAVHAGPAF 195
           VVA  LG  +PS + +  +  L HY D  GHGL     +  G  F
Sbjct: 167 VVAKWLGLTKPSSSGRLATRGLAHYPD--GHGLDPRFKMFVGHGF 209


>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 174 SDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRG 67
           S+ARA  V   + +V  +    + GF G+ VA  +G
Sbjct: 304 SEARAMAVEAIVEVVRAMGQLEMEGFAGYVVAMAKG 339


>09_06_0264 - 21929086-21931368
          Length = 760

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 98  LLGSGSPRTEATTKRTAMKAFIFLY 24
           LLG+ SPR E  +KR   +AF  +Y
Sbjct: 288 LLGTLSPRAEKGSKRWLRRAFALIY 312


>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 3   EIVTTTNIKKNEGFHCSSFRGCLGSGRP 86
           +I+TTT I       CSSFRG L + RP
Sbjct: 303 KIITTTRISDVARSCCSSFRGHLYNIRP 330


>03_05_0611 + 26113798-26114261,26114451-26114597,26114784-26115405
          Length = 410

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 71  RFWATLNPVKPFRSAADTWVTMLIFTAT 154
           R+WA L P  P R   + W T ++ T++
Sbjct: 118 RWWARLPPRPPPREDMERWSTSILLTSS 145


>01_05_0288 - 20477147-20477635,20477995-20478067,20478807-20478892
          Length = 215

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 153 VAVKISIVTQVSAALLNGFTGFRVAQNRGNHEKNCNESLHFSLYW 19
           +++  S+V        N +T F+ A+NR      C E    +L W
Sbjct: 165 ISILNSMVVVTKQEKANAYTVFKNAENREIFVSTCQEDAESALIW 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,044,229
Number of Sequences: 37544
Number of extensions: 123684
Number of successful extensions: 358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)