Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F04f
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)                 27   6.1  
SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)         26   8.0  
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_42097| Best HMM Match : DUF1605 (HMM E-Value=3e-15)
          Length = 889

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 94  SKTIQKRSGHLGHYADLYGHGLSSGIAVHA 183
           S + +++ G L +Y DL+GH    G  ++A
Sbjct: 600 SPSEEQKEGKLMYYVDLHGHASKRGCFIYA 629


>SB_31239| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.7e-16)
          Length = 476

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 136 HSDPGVRCASEWFYWVQGRPE 74
           +S PGV     W++W QG PE
Sbjct: 159 YSVPGVGSEWFWYHWRQGYPE 179


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 183 SMDSDARAQPVAVKISIVTQVSAALLNGFTGFRVAQNRGNHEKNC-NESLHFSL 25
           S+ S +    +A+ I I+   S      F GF +     NH+ +   ESL++++
Sbjct: 217 SLSSSSPPSTIAIVIIIIIATSIRSTRRFAGFDILGLANNHQNDYGEESLNYTI 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,514,332
Number of Sequences: 59808
Number of extensions: 119210
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)