Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F04f
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65950.1 68414.m07483 ABC1 family protein contains Pfam domai...    26   6.6  
At5g59840.1 68418.m07503 Ras-related GTP-binding family protein ...    26   8.7  
At3g46060.1 68416.m04984 Ras-related protein (ARA-3) / small GTP...    26   8.7  

>At1g65950.1 68414.m07483 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 551

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 34  MKAFIAVLFVVASVLGDPEPSKTIQKRSGHLGHYADLYGHG 156
           ++ F  ++FV   + GDP P   +    G  G    L  HG
Sbjct: 311 VEVFAEMIFVHGFIHGDPHPGNILVSPEGQNGFSLVLLDHG 351


>At5g59840.1 68418.m07503 Ras-related GTP-binding family protein
           contains Pfam profile: PF00071 Ras family
          Length = 216

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 177 DSDARAQPVAVKISIVTQVSAA 112
           D+D+RA+P  +KIS   Q + A
Sbjct: 183 DTDSRAEPATIKISQTDQAAGA 204


>At3g46060.1 68416.m04984 Ras-related protein (ARA-3) / small
           GTP-binding protein, putative identical to SP|P28186
           Ras-related protein ARA-3 {Arabidopsis thaliana};
           contains Pfam profile: PF00071 Ras family
          Length = 216

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 177 DSDARAQPVAVKISIVTQVSAA 112
           D+D+RA+P  +KIS   Q + A
Sbjct: 183 DTDSRAEPATIKISQTDQAAGA 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,290,930
Number of Sequences: 28952
Number of extensions: 86106
Number of successful extensions: 248
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)