Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F03f
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    29   0.37 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   1.5  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    25   4.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   6.0  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   7.9  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   7.9  

>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 28.7 bits (61), Expect = 0.37
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -2

Query: 386 FKHASYLLALTSRHYVTDNNRDVALTPNDHLIRSITILKNKRKGKSNSIT 237
           +  AS +L  T R   TD N +   T N  + ++ T+  N +  KS+S+T
Sbjct: 354 YPQASEILDAT-RFLKTDTNNEQKPTNNSTITKATTLSDNSQNDKSSSVT 402


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 365  LALTSRHYVTDNNRDVALTPNDHLIRSITILKNK 264
            L L    Y+T  N+D+  T N  L + +  LK++
Sbjct: 1005 LVLLGNQYLTSGNQDINNTSNGSLFKRLRYLKSR 1038


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 171 STLDQRALSFPLLES*LNVYIR*LSTKLY*PENVCRPHR*DIINPGSTDRHNVPSAQ 1
           STL+QRALS  L     N YI+ L   L    ++  P +  ++ P  +   ++P  +
Sbjct: 54  STLEQRALSTEL----FNSYIQRLKANLAFVVSIASPRQMQVLTPPLSCPESLPQLE 106


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 57   DGVDKHFRANTALYLVSVCKH 119
            D  DKHF  N    ++ + KH
Sbjct: 1711 DSADKHFLTNYGFSIIDIVKH 1731


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 383 KHASYLLALTSRHYVTDNNRDVALTPNDHLIRS 285
           +H SY+    S   +    +D++LTP +H I S
Sbjct: 371 EHPSYIGKALSYGIIGKTGQDLSLTPLNHSIES 403


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 386 FKHASYLLALTSRHYVTDNNRDVALTPNDHLIRSITILKNKRK 258
           F+    ++ALT+   + D N  +A   ND L + ++++  ++K
Sbjct: 458 FQSPVIIVALTASSLMADRNEALAAGCNDFLTKPVSLVWLEKK 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,450
Number of Sequences: 5004
Number of extensions: 28080
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)