Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F03f
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0418 - 3142659-3145622                                           27   4.3  
06_02_0006 + 10528423-10528768,10529132-10529201,10530820-105308...    27   7.6  
01_06_1012 - 33806190-33807875,33807963-33808331                       27   7.6  

>01_01_0418 - 3142659-3145622
          Length = 987

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   LSARYIMSICGARIDNVLTMGSTNIFGLIQLC 96
           LS    +SIC AR   +L +   N+ GLI LC
Sbjct: 601 LSGEIPLSICDARDILLLDLSYNNLSGLIPLC 632


>06_02_0006 +
           10528423-10528768,10529132-10529201,10530820-10530892,
           10530973-10531053,10532124-10532239,10532339-10532630
          Length = 325

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 214 IYSNFGXXXXXXXXXXIGSTGALISSSRVLTKCLHTLTKYKAVLARKCLSTPSLGHYQSW 35
           I + FG          +G   A +  SR L +C     +Y   L  KC  T + GH  +W
Sbjct: 112 IPTGFGKITIGSQQSLVGDWPAALLKSRSL-RCRREQGEYFVTLPLKCEQTSTTGHSLAW 170

Query: 34  LHR 26
             R
Sbjct: 171 PDR 173


>01_06_1012 - 33806190-33807875,33807963-33808331
          Length = 684

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 148 LISSSRVLTKCLHTLTKYKAVLARKCLSTPSL-GHYQSWLH 29
           L++   +++ CLH     +A L  K ++   L GH+ SW+H
Sbjct: 392 LMAQHNLISYCLHD----RATLLTKVITMVGLKGHWDSWMH 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,024
Number of Sequences: 37544
Number of extensions: 147157
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)