Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F02f
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical pr...    27   3.0  
U23519-8|AAK31503.3|  734|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical ...    27   4.0  
Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.    26   7.0  
Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical p...    26   7.0  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    26   7.0  
AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical ...    26   7.0  
Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U88310-3|AAB42337.1|  608|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        26   9.3  
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    26   9.3  
AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical ...    26   9.3  

>Z92796-4|CAB63231.1|  516|Caenorhabditis elegans Hypothetical
           protein H25K10.5 protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 342 YIKSSFEDNNLSVIVFENPKIILI*IYMQKNIHCSVTQET 223
           YIK     N  SV++++NP      I  + N HC + Q T
Sbjct: 443 YIKHIISKNEKSVVIYDNP------ILFENNEHCKMYQLT 476


>U23519-8|AAK31503.3|  734|Caenorhabditis elegans Hypothetical
           protein F26G1.6 protein.
          Length = 734

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -3

Query: 342 YIKSSFEDNNLSVIVFENPKIIL 274
           ++ SSF+D++ +V++F  PK+ L
Sbjct: 236 FVHSSFDDSDKNVLMFSPPKLFL 258


>AF068708-7|AAC17760.1|  365|Caenorhabditis elegans Hypothetical
           protein C18G1.8 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 258 QKNIHCSVTQETHFPLQEL*GDLYFWDENHC 166
           +KN+    T  THF  Q +  D   + +NHC
Sbjct: 267 KKNLVIQKTNSTHFISQNMPADDLIYSKNHC 297


>Z99267-1|CAB16465.1|  732|Caenorhabditis elegans C33A12.12 protein.
          Length = 732

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 183 WDENHCLHNQILRCRCKTLHDNNCLL 106
           W  +H  H Q+L  R     +NNCL+
Sbjct: 193 WGISHLNHLQVLHMRNLKFENNNCLM 218


>Z68493-14|CAA92801.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 183 WDENHCLHNQILRCRCKTLHDNNCLL 106
           W  +H  H Q+L  R     +NNCL+
Sbjct: 193 WGISHLNHLQVLHMRNLKFENNNCLM 218


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 274 NINLYAKKYTLQCYTRNTFSF 212
           N     +KY ++CY R TF F
Sbjct: 696 NYGFDCEKYLIKCYNRKTFKF 716


>AL033537-1|CAA22147.1|  732|Caenorhabditis elegans Hypothetical
           protein C33A12.12 protein.
          Length = 732

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 183 WDENHCLHNQILRCRCKTLHDNNCLL 106
           W  +H  H Q+L  R     +NNCL+
Sbjct: 193 WGISHLNHLQVLHMRNLKFENNNCLM 218


>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 91  RIFDCCHINIKKV*DKWKCYILY 23
           ++F  C +++  + D WKCYI Y
Sbjct: 74  KLFSRCLVSVLNI-DLWKCYIHY 95


>U88310-3|AAB42337.1|  608|Caenorhabditis elegans Hypothetical
           protein C24G7.1 protein.
          Length = 608

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 85  FDCCHINIKKV*DKWKCYILYQLLNYKP 2
           FDCC I+   +    KCY L  L + KP
Sbjct: 229 FDCCSISTPVLTPLGKCYTLDLLSSTKP 256


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 91  RIFDCCHINIKKV*DKWKCYILY 23
           ++F  C +++  + D WKCYI Y
Sbjct: 69  KLFSRCLVSVLNI-DLWKCYIHY 90


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 91  RIFDCCHINIKKV*DKWKCYILY 23
           ++F  C +++  + D WKCYI Y
Sbjct: 74  KLFSRCLVSVLNI-DLWKCYIHY 95


>AF026205-7|AAD47130.1|  118|Caenorhabditis elegans Hypothetical
           protein T23E7.2d protein.
          Length = 118

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 201 TVLAKENVFLV*HCSVYFFAYRFIL 275
           T++  +N F V +C  YFF Y F L
Sbjct: 8   TLILIKNTFYVQYCIPYFFYYPFYL 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,858,465
Number of Sequences: 27780
Number of extensions: 151421
Number of successful extensions: 399
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)