Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F02f
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   4.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   5.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    20   7.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   7.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    20   7.8  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 252 NIHCSVTQETHFPL 211
           N+ CSV+ E H P+
Sbjct: 46  NVSCSVSWEVHDPV 59


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 289 SQNNFNINLYAKKYTL 242
           + NN+N  LY K Y +
Sbjct: 107 NNNNYNKKLYYKNYII 122


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 283 NNFNINLYAKKYTL 242
           NN+N  LY K Y +
Sbjct: 98  NNYNKKLYYKNYII 111


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 283 NNFNINLYAKKYTL 242
           NN+N  LY K Y +
Sbjct: 339 NNYNKKLYYKNYII 352


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 283 NNFNINLYAKKYTL 242
           NN+N  LY K Y +
Sbjct: 334 NNYNKKLYYKNYII 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,556
Number of Sequences: 438
Number of extensions: 2118
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)