Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F01f
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   0.92 
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    27   2.1  
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch...    26   3.7  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   6.5  
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    25   8.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 291 FTLFSNSNSDKNVSSLKCFSNENVSQIL 208
           F+L  N N D N SSLKC  N  +S ++
Sbjct: 345 FSLTPNDNYDVNDSSLKCRVNSLISLVI 372


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 182 TFKSIMN*NKICETFSFEKHLSDETFLSEFEFENNVNVLMDQVYISIEIQE 334
           TF+       +  TFSF+ H+   +++ E    N   ++ D   +  ++QE
Sbjct: 512 TFRIPFQVPPVAGTFSFQLHIMSNSYVGEDVISNLTMIVKDTSVLQEQLQE 562


>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
           Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 273 SNSDKNVSSLKCFSNENVSQILF*FIMLLNVTNKLYLVMCFIEM 142
           S + + +S LK  ++EN        + +L+  +KLYLV  F++M
Sbjct: 46  STAIREISLLKEVNDENNRSNCVRLLDILHAESKLYLVFEFLDM 89


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 129 SVSVASNYK*LMRVSFLAFSLLVDNANAFSNFSDVLTIFNKVS 1
           SVS+  + + L  V  + F L    A  +SNF  ++T +NKV+
Sbjct: 159 SVSIDVSQRALREVYLMPFQL----ACKYSNFKSLMTSYNKVN 197


>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 312 YT*SINTFTLFSNSNSDKNVSSLKCFSNENVSQILF*FIMLLNVTNKLYLV 160
           Y  S ++  +  +   +K +S+ + F++  V  +    I LLN+TN L L+
Sbjct: 95  YVFSTDSIPIIPDFLLEKQISTNEPFTDAYVEYMRASLIQLLNITNGLPLI 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,959
Number of Sequences: 5004
Number of extensions: 28060
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)