Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F01f
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical pr...    30   0.83 
Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z81496-7|CAB04073.1|  301|Caenorhabditis elegans Hypothetical
           protein F09C6.6 protein.
          Length = 301

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 209 KICETFSFEKHLSDETFLSEFEFEN-NVNVLMDQVYISIEIQE 334
           K C+TF F +++  + F   F FEN N+++L     I++++++
Sbjct: 188 KNCKTFKFSRYVDSKLFSHLFHFENFNISMLDFNTQIAMKMRD 230


>Z92817-6|CAB60324.1|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 467 LEMYSG*LEKILKTNAVLINEKWS 396
           ++ YSG L KI+K N  + N+ WS
Sbjct: 331 MQRYSGRLSKIMKINNAIQNDIWS 354


>Z83111-7|CAB05534.2|  384|Caenorhabditis elegans Hypothetical
           protein F57G8.6 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 467 LEMYSG*LEKILKTNAVLINEKWS 396
           ++ YSG L KI+K N  + N+ WS
Sbjct: 331 MQRYSGRLSKIMKINNAIQNDIWS 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,772,733
Number of Sequences: 27780
Number of extensions: 151777
Number of successful extensions: 330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)