Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F01f
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    26   0.26 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.6  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 171 LYLVMCFIEMFIFLSVSVASNY 106
           +YLVMCF+ +F  L    A NY
Sbjct: 306 IYLVMCFVFVFAALLEYAAVNY 327


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 81  LAFSLLVDNANAFSNFSDVLTIFNK 7
           LA   L DNA AF    +++TIF +
Sbjct: 228 LALRWLRDNAEAFGGDPELITIFGE 252


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 81  LAFSLLVDNANAFSNFSDVLTIFNK 7
           LA   L DNA AF    +++TIF +
Sbjct: 228 LALRWLRDNAEAFGGDPELITIFGE 252


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 72  SLLVDNANAFSNFSDVLTIFNKVS 1
           S +VD     SN++DV  IF  +S
Sbjct: 77  SPMVDFGYDISNYTDVHPIFGTIS 100


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = -2

Query: 303 SINTFTLFSNSNSDKNVSSLKCFSNENVSQILF*FIMLLNV 181
           S++  T+ +N+N   N ++   ++N N ++ L+    ++N+
Sbjct: 84  SLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINI 124


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 72  SLLVDNANAFSNFSDVLTIFNKVS 1
           S +VD     SN++DV  IF  +S
Sbjct: 77  SPMVDFGYDISNYTDVHPIFGTIS 100


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 57 NANAFSNFSDVLTIF 13
          NA  FSNF D +T++
Sbjct: 26 NAANFSNFEDRVTMY 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,820
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)