Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E12f
         (478 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0312 - 7168332-7168408,7168492-7168621,7168793-7168861,716...    29   1.9  
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419...    27   5.9  

>09_02_0312 -
           7168332-7168408,7168492-7168621,7168793-7168861,
           7168947-7169066,7169356-7169440,7169565-7169650,
           7169762-7169914,7170008-7170130,7170974-7171357
          Length = 408

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 21  LWYLFNTKFILYNKFIL 71
           LWYLFN  F +YNK +L
Sbjct: 114 LWYLFNIYFNIYNKQVL 130


>05_01_0502 +
           4191443-4191769,4191770-4191892,4194161-4194313,
           4194420-4194505,4194648-4194732,4194871-4194990,
           4195066-4195134,4195351-4195506
          Length = 372

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 21  LWYLFNTKFILYNKFIL*YICF 86
           +WYL N  F ++NK +  YI F
Sbjct: 57  VWYLLNIYFNIFNKLVCTYIFF 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,847,107
Number of Sequences: 37544
Number of extensions: 148457
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)