Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E12f
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   2.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   2.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   2.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.8  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.0  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 342 NNDNY*KENYLFSG*FKIVNIPQ 410
           NN+NY   NY     + I+NI Q
Sbjct: 99  NNNNYNNNNYNKKLYYNIINIEQ 121


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 342 NNDNY*KENYLFSG*FKIVNIPQ 410
           NN+NY   NY     + I+NI Q
Sbjct: 99  NNNNYNNNNYNKKLYYNIINIEQ 121


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 466 ATISLTFALAQIIDQVAEFC-GMLTI 392
           + + LTF L  I+ QVA  C G++ I
Sbjct: 79  SAVGLTFLLGAILVQVAIICEGVMNI 104


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 181 CSFELKLCIVFKDSMYI 231
           C F +KL   FKD  Y+
Sbjct: 425 CDFVVKLFKTFKDRKYL 441


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -2

Query: 378 KISNFLFNSYHCYQLVPVPTNRDLAVF 298
           +I   + + YH Y++   P N+D  ++
Sbjct: 420 RIYKRIIDYYHSYKMHQKPYNKDEIIY 446


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -2

Query: 378 KISNFLFNSYHCYQLVPVPTNRDLAVF 298
           +I   + + YH Y++   P N+D  ++
Sbjct: 420 RIYKRIIDYYHSYKMHQKPYNKDEIIY 446


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 13  KNNYGICLTQNLSYIINLSYN 75
           KN Y + L+  +  I+N  +N
Sbjct: 375 KNEYMLALSNRMQKIVNNDFN 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,235
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)