Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E11f
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   0.64 
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    24   6.0  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    24   6.0  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    24   7.9  

>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 339 QSTHSFRPHPNPTRPL*IRA 280
           Q THS RP PN + PL +R+
Sbjct: 589 QQTHSSRPTPNASSPLDVRS 608


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 47  VPRLSLKLLVLCSWSYFNLHGTKMAS 124
           V  +SLK+ V+C    FN  GT++ +
Sbjct: 168 VAHVSLKMDVMCQSMSFNADGTRLVT 193


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 226 RIHTVRYKMSLLCWFMTHSDAITELHLLKLID 131
           ++ + +Y +  + WF+ HS  I+ L+    ID
Sbjct: 170 KVSSKQYDLREVTWFLDHSSLISRLYFDVKID 201


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 62  KTNAEHNFHSTDVINTS 12
           + N  HNFHS DV   S
Sbjct: 712 RANGMHNFHSEDVTGQS 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,138
Number of Sequences: 5004
Number of extensions: 23811
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)