Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E10f
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   128   2e-31
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   125   2e-30
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   0.16 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   2.0  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   2.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   3.5  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   3.5  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    24   8.2  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   8.2  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    24   8.2  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  128 bits (310), Expect = 2e-31
 Identities = 59/116 (50%), Positives = 84/116 (72%)
 Frame = +3

Query: 6   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 185
           I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS+K
Sbjct: 5   IYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGSRK 63

Query: 186 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 353
             A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+
Sbjct: 64  HNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGER 119


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  125 bits (301), Expect = 2e-30
 Identities = 58/116 (50%), Positives = 82/116 (70%)
 Frame = +3

Query: 6   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 185
           I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS+K
Sbjct: 5   IYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGSRK 63

Query: 186 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 353
             A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+
Sbjct: 64  HNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGER 119


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +3

Query: 27   KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 194
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 195  AVRTVCSHVENMIKGVT 245
             + T+CS + N++  VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/63 (22%), Positives = 35/63 (55%)
 Frame = +3

Query: 60   SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 239
            S+L  +   + ++ RN + L++  ++VN     +E W G +   +AV T  + ++++ + 
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169

Query: 240  VTK 248
            ++K
Sbjct: 1170 LSK 1172


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 193 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 83
           A SFL+P   STF R  F+  +S   C +   LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 203 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGP 81
           PH GK    S   +N  E+R   A+V+S   + PF    GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 209 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGPFNCHQT 63
           D P+G     GS  F+      V+H+N N+    +  +N     N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 144 PRLLKVEKWFGSKKELAAVRTVCSHVENMIK 236
           PRL+  +KW      L A+ ++    E ++K
Sbjct: 377 PRLIPSQKWSERHAALMAISSIAEGAEKLMK 407


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = -2

Query: 164 LNLQETRVYHANVNSQVFKVPFENSAGPFNCHQTRFHMDRKPVW 33
           L+ Q   +++    + + ++   N    F+CH+  F      VW
Sbjct: 259 LHNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNTFFTSNSYVW 302


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 17  SESQNPRRAYGPCEIASGDS*RAPRSSQKE 106
           ++ ++P+R Y   E+ SGD    P+  Q+E
Sbjct: 155 TDEKDPKRLYVNSEVYSGDLIWKPQGRQEE 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,166
Number of Sequences: 5004
Number of extensions: 29699
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)