Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E10f
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    150   3e-37
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   146   3e-36
03_06_0712 - 35683814-35684065,35685296-35685466                       27   3.4  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   4.4  
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164...    27   5.9  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     27   5.9  
02_04_0147 + 20194244-20195717,20195953-20195969                       26   7.7  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  150 bits (364), Expect = 3e-37
 Identities = 67/119 (56%), Positives = 95/119 (79%), Gaps = 1/119 (0%)
 Frame = +3

Query: 6   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSK 182
           I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WFG++
Sbjct: 4   ILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTR 63

Query: 183 KELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 359
           + +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +
Sbjct: 64  RTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKV 122


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  146 bits (355), Expect = 3e-36
 Identities = 66/115 (57%), Positives = 90/115 (78%), Gaps = 3/115 (2%)
 Frame = +3

Query: 24  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 194
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 195 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 359
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKV 115


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 93  VLKRNF-KHLAVDIRMVNPRLLKVE 164
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 57  KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 233
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S+V  M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201

Query: 234 K 236
           +
Sbjct: 202 E 202


>03_01_0208 +
           1642041-1642118,1642200-1642310,1643157-1643318,
           1643433-1643600,1643683-1643843,1643930-1643991,
           1644078-1644127,1644247-1644653,1644760-1644895
          Length = 444

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 24  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 131
           VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 135 VKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDI 170


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 30  IPDGLTVHVKSRLVTVKGPRGVLKRN 107
           +P G T H +S +  V+GPRG +  N
Sbjct: 61  LPRGATSHRESGISAVRGPRGRIGEN 86


>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 33  PDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVE 164
           PD + VH+++  V  +    V+   F H   D+R  +PR+  +E
Sbjct: 168 PDRVRVHLRAVDVAARETHPVIC--FSHADADLRSADPRVFTIE 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,263,300
Number of Sequences: 37544
Number of extensions: 199126
Number of successful extensions: 426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)