Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E10f
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        157   3e-39
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     28   2.0  
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)                    28   2.0  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   2.6  
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           27   6.1  
SB_37061| Best HMM Match : G-gamma (HMM E-Value=4.7)                   26   8.0  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       26   8.0  
SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)                26   8.0  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  157 bits (380), Expect = 3e-39
 Identities = 68/118 (57%), Positives = 92/118 (77%)
 Frame = +3

Query: 6   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 185
           I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF S+K
Sbjct: 560 ILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRK 619

Query: 186 ELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 359
           ELA V+T+ +H+ENMIKGV  G++YKMRAVYAHFPIN    E  +++E+RNFLGEKY+
Sbjct: 620 ELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYV 677


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 211 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 68
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +3

Query: 27  KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 161
           K+ DGL VH+ ++ V  K P+    + KR  + L A+ I + +P + KV
Sbjct: 4   KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52


>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
          Length = 197

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -2

Query: 149 TRVYHANVNSQVFKVP-------FENSAGPFNCHQTRFHMDRKP 39
           TR YH NV   VF V        F  S G  N HQ  +  DR+P
Sbjct: 57  TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 54   VKSRLVTVKGPRGVLKRNFKHL 119
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 158 LQETRVYHANVNSQVFKVPFENSAGPFNCHQ 66
           L  TR+ +  V+S   +V  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 180  KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE 329
            K+ LAA + V +   N+ KGVT+G    K R V    PI    V T+G  + +
Sbjct: 948  KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQ 1000


>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 317 ITLSGDTVNGEVSIHSTHLVLEAFSYSF 234
           +T+  D   G VS H+THLV  A S ++
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAY 200


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 107 VPFENS-AGPFNCHQTRFHMD--RKPVWDFDFLIC 12
           +PF     GP +C +TRF +D  R P  D+  L+C
Sbjct: 712 IPFNALIVGPTSCGKTRFIVDRLRGPFLDYIVLVC 746


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -2

Query: 149 TRVYHANVNSQVFKV-------PFENSAGPFNCHQTRFHMDRKP 39
           TR YH NV   VF V        F  S G  + HQ  +  DR+P
Sbjct: 108 TRSYHKNVVKLVFGVNDYWYRYEFAKSRGQIHWHQLSWREDRQP 151


>SB_37061| Best HMM Match : G-gamma (HMM E-Value=4.7)
          Length = 209

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 95  NSAGPFNCHQTRFHMDRKPVWDFDFLICYNL 3
           +S GP +C  +   +    VW FD +IC +L
Sbjct: 146 SSFGPLSCWVSLGDIVLGQVWGFDMIICLSL 176


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 11   SKSESQNPRRAYGPCEIASGDS*RAPR 91
            S+ ++    R Y PC I SG++  APR
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPR 1389


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 308 SGDTVNGEVSIHSTHLVLEAFSYSFNHVL 222
           +GD  +G+ S+HS  ++ +A  YS   +L
Sbjct: 181 NGDYRSGDCSLHSFIIIFQAACYSIERIL 209


>SB_2047| Best HMM Match : Ependymin (HMM E-Value=6e-05)
          Length = 739

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -2

Query: 107 VPFENS-AGPFNCHQTRFHMD--RKPVW-DFDFLI 15
           +PF     GP +C +TRF +D  R P W  FD+++
Sbjct: 6   IPFNALIVGPTSCGKTRFVVDRLRGPFWVKFDYIL 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,102
Number of Sequences: 59808
Number of extensions: 237019
Number of successful extensions: 638
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)