Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E09f
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   5.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   5.0  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    24   8.7  

>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 352 DILIPPTQFTDTKDPKVYCITYIYL 278
           + L PP   +D K+ + +C +Y Y+
Sbjct: 59  NFLFPPIAISDPKEAQNHCSSYYYI 83


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -2

Query: 382 IQVVELTSQDDILIPPTQFTDTKD-PKVY----CITYIYLCN*SRVVIKVELESMIISFL 218
           I++++   ++     P   T+  D P +Y    C+ + +  N    V+++   +M +  L
Sbjct: 738 IKIIDFLKEEKRDYKPDLLTEVTDLPDLYSMSLCVVFFHKYNFQDEVLRMRRRNMFMCAL 797

Query: 217 TTYLQ 203
            TY+Q
Sbjct: 798 MTYMQ 802


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 421 HPFQSKDSKECKTIQVVELTSQDDILIPPT 332
           H F  K S++  T+   ++ +QDD L  PT
Sbjct: 374 HVFVLKSSEDAITLNEEKIATQDDPLEAPT 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,126
Number of Sequences: 5004
Number of extensions: 34064
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)