Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E09f
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1400 - 37036957-37037705,37037809-37037995,37038108-370382...    29   2.1  
03_03_0166 - 15027065-15028465                                         27   4.9  

>01_06_1400 -
           37036957-37037705,37037809-37037995,37038108-37038205,
           37039562-37039655
          Length = 375

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 61  VILKILIQYPSFSIIDHINLLGIFIFVLR*FIFCVFFIFLHKNK 192
           V + IL Q PSF  + H+NL+ + + +   F      I+L  +K
Sbjct: 87  VFMMILAQMPSFHSLRHVNLISLVLCLAYSFCAVAACIYLGSSK 130


>03_03_0166 - 15027065-15028465
          Length = 466

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 70  LELRHYNVLVLNLNGFFP 17
           L  R  +VLV+N+NGFFP
Sbjct: 127 LRARDVDVLVVNVNGFFP 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,206,546
Number of Sequences: 37544
Number of extensions: 177486
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)